Cancer specific CNV caller for Next Generation sequence
INSTALLATION Go to the .../WaveCNV/src/ directory and run 'perl Build.PL' to configure the installation. Then run './Build installdeps' to install missing perl dependencies and './Build installexes' to install missing third party executables. Finally run './Build install' to install scripts into the .../WaveCNV/bin/ directory.
To run with the UCSC verion of the human reference genome (HG19) you must run './Build hg19' to download it to the data directory.
use the .../WaveCNV/bin/cnv_caller.pl script to annotate existing segmentation calls.
There are example files to run with in the .../WaveCNV/data/ directory.