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45 Open 11 Closed
45 Open 11 Closed
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Issues list

Plate Map Search Error in Cytosnake Workflow bug Something isn't working
#99 opened Jan 3, 2024 by axiomcura
CytoSnake crashes when using .parquet profiles.
#98 opened Dec 28, 2023 by axiomcura
CytoSummaryNet new aggregation module for CytoSnake NewModule Adding new modules
#97 opened Dec 19, 2023 by axiomcura
Add Unit testing documentation
#96 opened Nov 8, 2023 by axiomcura
Reduce Code Duplication Due To Profiling Design
#95 opened Nov 8, 2023 by axiomcura
Create CI workflows to test on other types of OS
#94 opened Nov 8, 2023 by axiomcura
Create functional tests for benchmarking testing refers to tests (issues or required)
#93 opened Nov 1, 2023 by axiomcura
Create documentation for Unit tests
#92 opened Nov 1, 2023 by axiomcura
2 tasks
Update config files with newly added Pycytominer None defaults Configs-issue Anything related to the configs
#91 opened Oct 25, 2023 by axiomcura
Remove iteration process in feature_select enhancement New feature or request
#89 opened Oct 19, 2023 by axiomcura
@axiomcura
1
Use CI/CD tools to automatically synchronize the Bioconda version
#88 opened Sep 1, 2023 by axiomcura
Revamping get_input_path() enhancement New feature or request
#86 opened Sep 1, 2023 by axiomcura
CytoSnake modules fails when using multiple inputs and generating one output due to get_data_path() bug Something isn't working
#85 opened Sep 1, 2023 by axiomcura
Update data storage locations enhancement New feature or request
#84 opened Sep 1, 2023 by axiomcura
Develop a function that searches for plate map based on given plate name. enhancement New feature or request
#83 opened Sep 1, 2023 by axiomcura
Establishing config standards for class methods Configs-issue Anything related to the configs
#82 opened Aug 31, 2023 by axiomcura
Allow whole config loading to scripts instead of partial loading.
#81 opened Aug 31, 2023 by axiomcura
1
_path.yaml capturing empty keys
#80 opened Aug 30, 2023 by axiomcura
Standardize Path objects in CytoSnake with pathlib.Path objects. enhancement New feature or request
#79 opened Aug 30, 2023 by axiomcura
@axiomcura
1
Adding Least Recently Used (LRU) caching to pathing functions enhancement New feature or request
#76 opened Aug 14, 2023 by axiomcura
Findings from testing cytosnake in NF1 cell painting repo
#73 opened Jul 24, 2023 by gwaybio
@axiomcura
CytoSnake "Concepts" diagram hides black text and arrows in dark mode
#67 opened Jun 15, 2023 by MattsonCam
Create a get_output() helper function
#62 opened May 23, 2023 by axiomcura
Make get_input() function more flexible
#61 opened May 23, 2023 by axiomcura
Add workflow parameters in general config file. enhancement New feature or request
#57 opened May 17, 2023 by axiomcura
@axiomcura
ProTip! Adding no:label will show everything without a label.