BioFormatsLink is a package for interacting with Bio-Formats library in the Wolfram Language. BioFormatsLink supports 12.1 and later versions of Wolfram Language deployments for the desktop, including Wolfram Desktop and Mathematica.
To build a .paclet file:
- Build documentation using Ant's script in Scripts/docbuild.xml.
- Open Scripts/assemblePaclet.wl in the Wolfram system.
- Run the entire package.
- The
.pacletfile will be created in/full/path/to/BioFormatsLink/build/date-timedirectory.
The BioFormatsLink release comes in the form of a .paclet file, which contains the entire package and its documentation. Download the latest release from the Github repo's releases page. To install, run the following command in the Wolfram Language:
PacletInstall["/full/path/to/BioFormatsLink-version.paclet"]
This will permanently install the BioFormatsLink paclet. The Wolfram Language will always use the latest installed version of BioFormatsLink. Installed versions can be enumerated using the command:
PacletFind["BioFormatsLink"]
And all versions can be uninstalled using the command:
PacletUninstall["BioFormatsLink"]
To access the documentation, open the notebook interface help viewer, and search for BioFormatsLink/tutorial/ImportingDataFromBioFormats. This will open a tutorial on how to import data using BioFormatsLink.
To start, load the BioFormatLink package, and try opening an image file.
Needs["BioFormatsLink`"]
Import["ExampleData/spikey.tiff", "BioFormats"]
See the following files for more information:
- LICENSE.txt - BioFormatsLink license
- CONTRIBUTING.md - Guidelines for contributing to BioFormatsLink