Skip to content

Issues: Workflomics/containers

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

28 Open 16 Closed
28 Open 16 Closed
Author
Filter by author
Label
Filter by label
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Milestones
Filter by milestone
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Test CWL annotations (executions and compare to the bio.tools annotations)
#56 opened Mar 11, 2024 by vedran-kasalica
@kretep @vedran-kasalica
Test and fix mzRecal
#54 opened Feb 12, 2024 by vedran-kasalica
Regenerate workflow example1 to example7 using APE with updated annotations so taht manual edit is not required
#53 opened Feb 12, 2024 by nahmedraja
@vedran-kasalica
Create a Workflomics End-to-End test
#50 opened Feb 7, 2024 by vedran-kasalica
@vedran-kasalica
Implement MSFragger
#47 opened Jan 31, 2024 by vedran-kasalica
Implement MS_Amanda
#46 opened Jan 31, 2024 by vedran-kasalica
1
Implement Sage
#45 opened Jan 31, 2024 by vedran-kasalica
Implement 2 PeptideProphet tools
#44 opened Jan 31, 2024 by vedran-kasalica
Regenerate example workflows 1 to 3 with APE with updated annotations of PeptideProphet(issue# 21) ProteinProphet(issue# 22) and StPeter(issue# 23)
#42 opened Jan 31, 2024 by nahmedraja
@vedran-kasalica
Design-time benchmarks - tooltips are cropped
#40 opened Jan 30, 2024 by vedran-kasalica
Add alternatives to PeptideProphet
#39 opened Jan 30, 2024 by vedran-kasalica
Add alternatives to g:Profiler
#38 opened Jan 30, 2024 by vedran-kasalica
Add alternatives to Comet
#36 opened Jan 29, 2024 by vedran-kasalica
3 tasks
2
Fix GOEnrichment
#35 opened Jan 29, 2024 by vedran-kasalica
Add SHIC
#34 opened Jan 29, 2024 by vedran-kasalica
@nahmedraja @vedran-kasalica
Test CLI on Windows
#31 opened Jan 28, 2024 by vedran-kasalica
2 tasks
@nahmedraja @magnuspalmblad @524D
Test CLI on Mac
#30 opened Jan 28, 2024 by vedran-kasalica
1 of 2 tasks
@kretep @vedran-kasalica
Test CLI on Linux
#29 opened Jan 28, 2024 by vedran-kasalica
1 of 2 tasks
@nahmedraja
Return docker images for the tools that were removed in the initial containerless PR.
#28 opened Jan 27, 2024 by vedran-kasalica
@nahmedraja
Include more working docker images (to support cwl tool execution)
#27 opened Jan 27, 2024 by vedran-kasalica
9 tasks
@nahmedraja @vedran-kasalica
@magnuspalmblad @524D
1
Error during container build
#18 opened Aug 24, 2023 by 524D
Build instructions error message
#17 opened Aug 24, 2023 by 524D
Consider using the bioconda "mulled" feature to make the container
#15 opened Jun 16, 2023 by mr-c
Using --leave-tmpdir option of cwltools documentation Improvements or additions to documentation
#14 opened Jun 14, 2023 by nahmedraja
Generate workflow assuming a certain order for the input and output files depending on the format.
#13 opened Jun 14, 2023 by nahmedraja
ProTip! no:milestone will show everything without a milestone.