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@Workflomics

Workflomics

Projects tailored for automated creation and benchmarking of workflows in life sciences .
README.md

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Hi, welcome to the Workflomics project! 👋

Workflomics is a platform used to help bioinformaticians to automatically generate and compare computational workflows!

The following video explains Workflomics in 10 minutes:

Workflomics - Youtube video

Useful links:

Architecture

architecture_workflomics
Architecture Overview of the Workflomics Platform.

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  1. workflomics-frontend workflomics-frontend Public

    Web interface for automated generation and benchmarking of computational workflows in bioinformatics.

    TypeScript 3 2

  2. tools-and-domains tools-and-domains Public

    Containers to package the required sofware for executing CWL workflows

    Common Workflow Language 3

  3. workflomics-benchmarker workflomics-benchmarker Public

    Library used to execute workflows (in CWL) and benchmark them as part of the Workflomics.

    Python

  4. workflomics-readthedocs workflomics-readthedocs Public

    The repository is used to provide detailed documentation on how to use the Workflomics web interface and its ecosystem.

    1

  5. pubmetric pubmetric Public

    Library for benchmarking bioinformatics workflows using bibliographic networks.

    Jupyter Notebook 1 1

Repositories

Showing 10 of 12 repositories
  • .github Public
    Workflomics/.github’s past year of commit activity
    0 0 0 0 Updated May 1, 2025
  • tools-and-domains Public

    Containers to package the required sofware for executing CWL workflows

    Workflomics/tools-and-domains’s past year of commit activity
    Common Workflow Language 0 Apache-2.0 3 30 2 Updated Apr 7, 2025
  • pubmetric Public

    Library for benchmarking bioinformatics workflows using bibliographic networks.

    Workflomics/pubmetric’s past year of commit activity
    Jupyter Notebook 1 Apache-2.0 1 6 4 Updated Mar 13, 2025
  • workflomics-readthedocs Public

    The repository is used to provide detailed documentation on how to use the Workflomics web interface and its ecosystem.

    Workflomics/workflomics-readthedocs’s past year of commit activity
    0 1 63 1 Updated Mar 10, 2025
  • workflomics-frontend Public

    Web interface for automated generation and benchmarking of computational workflows in bioinformatics.

    Workflomics/workflomics-frontend’s past year of commit activity
    TypeScript 3 Apache-2.0 2 11 0 Updated Mar 10, 2025
  • DemoKit Public

    Data and instructions needed to run locally the Workflomics project

    Workflomics/DemoKit’s past year of commit activity
    Common Workflow Language 0 Apache-2.0 1 0 1 Updated Nov 14, 2024
  • workflomics-benchmarker Public

    Library used to execute workflows (in CWL) and benchmark them as part of the Workflomics.

    Workflomics/workflomics-benchmarker’s past year of commit activity
    Python 0 Apache-2.0 0 3 0 Updated Sep 9, 2024
  • domain-annotations Public

    Annotations of scientific domains available at the Workflomics platform

    Workflomics/domain-annotations’s past year of commit activity
    0 Apache-2.0 0 3 0 Updated Sep 8, 2024
  • pubmetric-develipment Public
    Workflomics/pubmetric-develipment’s past year of commit activity
    Jupyter Notebook 0 Apache-2.0 0 0 0 Updated Aug 30, 2024
  • biohackathon_2023 Public

    Project #4 in BioHackathon 2023 (Barcelona)

    Workflomics/biohackathon_2023’s past year of commit activity
    TeX 0 0 0 0 Updated Dec 18, 2023
View all repositories

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