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@Workflomics

Workflomics

Projects tailored for automated creation and benchmarking of workflows in life sciences .
README.md

logo

Hi, welcome to the Workflomics project! 👋

Workflomics is a platform used to help bioinformaticians to automatically generate and compare computational workflows!

The following video explains Workflomics in 10 minutes:

Workflomics - Youtube video

Useful links:

Architecture

architecture_workflomics
Architecture Overview of the Workflomics Platform.

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  1. workflomics-frontend workflomics-frontend Public

    Web interface for automated generation and benchmarking of computational workflows in bioinformatics.

    TypeScript 4 5

  2. restape restape Public

    RESTful API for the APE library

    Java 1 2

  3. ape ape Public

    Tool for automated generation of computational workflows.

    Java 21 10

  4. tools-and-domains tools-and-domains Public

    Containers to package the required sofware for executing CWL workflows

    Common Workflow Language 5

  5. workflomics-benchmarker workflomics-benchmarker Public

    Library used to execute workflows (in CWL) and benchmark them as part of the Workflomics.

    Python

  6. pubmetric pubmetric Public

    Library for benchmarking bioinformatics workflows using bibliographic networks.

    Jupyter Notebook 1 1

Repositories

Showing 10 of 16 repositories
  • restape Public

    RESTful API for the APE library

    Workflomics/restape’s past year of commit activity
    Java 1 Apache-2.0 2 16 2 Updated Feb 26, 2026
  • workflomics-frontend Public

    Web interface for automated generation and benchmarking of computational workflows in bioinformatics.

    Workflomics/workflomics-frontend’s past year of commit activity
    TypeScript 4 Apache-2.0 5 16 4 Updated Feb 23, 2026
  • ape Public

    Tool for automated generation of computational workflows.

    Workflomics/ape’s past year of commit activity
    Java 21 Apache-2.0 10 10 1 Updated Feb 20, 2026
  • pubmetric Public

    Library for benchmarking bioinformatics workflows using bibliographic networks.

    Workflomics/pubmetric’s past year of commit activity
    Jupyter Notebook 1 Apache-2.0 1 6 3 Updated Jan 6, 2026
  • ape_readthedocs Public

    The reository is used to provide detailed documentation on how to use the APE java library and its RESTful API.

    Workflomics/ape_readthedocs’s past year of commit activity
    Python 0 Apache-2.0 0 3 0 Updated Dec 4, 2025
  • tools-and-domains Public

    Containers to package the required sofware for executing CWL workflows

    Workflomics/tools-and-domains’s past year of commit activity
    Common Workflow Language 0 Apache-2.0 5 30 2 Updated Sep 25, 2025
  • APE-Web Public

    The web interface for APE (Automated Pipeline Explorer)

    Workflomics/APE-Web’s past year of commit activity
    TypeScript 3 Apache-2.0 0 0 0 Updated Jul 24, 2025
  • .github Public
    Workflomics/.github’s past year of commit activity
    0 0 0 0 Updated Jul 3, 2025
  • workflomics-readthedocs Public

    The repository is used to provide detailed documentation on how to use the Workflomics web interface and its ecosystem.

    Workflomics/workflomics-readthedocs’s past year of commit activity
    0 2 63 3 Updated Jun 11, 2025
  • workflomics-benchmarker Public

    Library used to execute workflows (in CWL) and benchmark them as part of the Workflomics.

    Workflomics/workflomics-benchmarker’s past year of commit activity
    Python 0 Apache-2.0 0 4 0 Updated Jun 10, 2025
View all repositories

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