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@Workflomics

Workflomics

Projects tailored for automated creation and benchmarking of workflows in life sciences .

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Hi, welcome to the Workflomics project! 👋

Workflomics is a platform used to help bioinformaticians to automatically generate and compare computational workflows!

The following video explains Workflomics in 10 minutes:

Workflomics - Youtube video

Useful links:

Architecture

architecture_workflomics
Architecture Overview of the Workflomics Platform.

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  1. workflomics-frontend workflomics-frontend Public

    Web interface for automated generation and benchmarking of computational workflows in bioinformatics.

    TypeScript 3 3

  2. tools-and-domains tools-and-domains Public

    Containers to package the required sofware for executing CWL workflows

    Common Workflow Language 3

  3. workflomics-benchmarker workflomics-benchmarker Public

    Library used to execute workflows (in CWL) and benchmark them as part of the Workflomics.

    Python

  4. workflomics-readthedocs workflomics-readthedocs Public

    The repository is used to provide detailed documentation on how to use the Workflomics web interface and its ecosystem.

    1

  5. pubmetric pubmetric Public

    Library for benchmarking bioinformatics workflows using bibliographic networks.

    Jupyter Notebook 1 1

Repositories

Showing 10 of 12 repositories

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