rm spoa

Xinglab · Mar 18, 2019 · 561e1dc · 561e1dc
1 parent 6fbb2af
commit 561e1dc
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Showing 6 changed files with 0 additions and 62 deletions.
diff --git a/.gitmodules b/.gitmodules
@@ -1,8 +1,3 @@
-[submodule "spoa"]
-    path = spoa
-    url = https://github.com/rvaser/spoa.git
-    ignore = dirty
-    branch = master
 [submodule "abPOA"]
 	path = abPOA
 	url = https://github.com/yangao07/abPOA.git

diff --git a/spoa b/spoa
diff --git a/src/gen_cons.c b/src/gen_cons.c
@@ -5,7 +5,6 @@
 #include "edlib_align.h"
 #include "abpoa_align.h"
 #include "ksw2_align.h"
-#include "spoa_align.h"
 #include "utils.h"
 
 void write_tandem_cons_seq(tandem_seq_t *tseq, char *cons_seq, int cons_len, int start, int end, double copy_num, mini_tandem_para *mtp, int8_t full_length) {

diff --git a/src/partition.c b/src/partition.c
@@ -5,7 +5,6 @@
 #include "edlib_align.h"
 #include "abpoa_align.h"
 #include "ksw2_align.h"
-#include "spoa_align.h"
 #include "utils.h"
 
 // pos: 0-base

diff --git a/src/spoa_align.cpp b/src/spoa_align.cpp
diff --git a/src/spoa_align.h b/src/spoa_align.h