upgrade to 1.1.10

YangLab · Jul 14, 2016 · 65e49b5 · 65e49b5
1 parent 833d160
commit 65e49b5
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -1,11 +1,20 @@
+## 1.1.10 (2016-7-14)
+
+Bugfixes:
+
+* case-sensitivity issue for fusion fix step
+
+Improvements:
+
+* use smaller test data
+
 ## 1.1.9 (2016-6-7)
 
 Improvements:
 
 * offer more deployment methods (PyPI, bioconda, Docker and Galaxy Tool). Thanks
 @bgruening and @anatskiy for their helps!
 
-
 ## 1.1.8 (2016-4-21)
 
 Improvements:

diff --git a/README.md b/README.md
@@ -7,9 +7,9 @@
 
 CIRCexplorer is a combined strategy to identify junction reads from back spliced exons and intron lariats.
 
-Version: 1.1.9
+Version: 1.1.10
 
-Last Modified: 2016-6-7
+Last Modified: 2016-7-14
 
 Authors: Xiao-Ou Zhang (zhangxiaoou@picb.ac.cn), Li Yang (liyang@picb.ac.cn)
 
@@ -133,7 +133,7 @@ python setup.py install
 ##Usage
 
 ```bash
-CIRCexplorer.py 1.1.9 -- circular RNA analysis toolkits.
+CIRCexplorer.py 1.1.10 -- circular RNA analysis toolkits.
 
 Usage: CIRCexplorer.py [options]
 

diff --git a/circ/CIRCexplorer.py b/circ/CIRCexplorer.py
@@ -2,7 +2,7 @@
 # -*- coding: utf-8 -*-
 
 """
-CIRCexplorer.py 1.1.9 -- circular RNA analysis toolkit.
+CIRCexplorer.py 1.1.10 -- circular RNA analysis toolkit.
 
 Usage: CIRCexplorer.py [options]
 
@@ -22,7 +22,7 @@
 """
 
 __author__ = 'Xiao-Ou Zhang (zhangxiaoou@picb.ac.cn)'
-__version__ = '1.1.9'
+__version__ = '1.1.10'
 
 from docopt import docopt
 import sys

diff --git a/setup.py b/setup.py
@@ -4,7 +4,7 @@
 from setuptools import setup, find_packages
 
 setup(name='CIRCexplorer',
-      version='1.1.9',
+      version='1.1.10',
       description='A combined strategy to identify circular RNAs (circRNAs and ciRNAs)',
       author='Xiao-Ou Zhang',
       author_email='zhangxiaoou@picb.ac.cn',

diff --git a/test/__init__.py b/test/__init__.py
@@ -3,17 +3,12 @@
 '''
 
 import os
-from utils import download_fa
 
 
 def setup_package():
     print('#test.__init__: Start testing')
     os.chdir('test')
-    download_fa('data')
 
 
 def teardown_package():
     print('#test.__init__: End testing')
-    os.remove('data/chromFa.tar.gz')
-    os.remove('data/hg19.fa')
-    os.remove('data/hg19.fa.fai')
diff --git a/test/data/annotated_junction.txt b/test/data/annotated_junction.txt
diff --git a/test/data/chr21.fa b/test/data/chr21.fa
diff --git a/test/data/chr21.fa.fai b/test/data/chr21.fa.fai
@@ -0,0 +1 @@
+chr21	48129895	7	50	51
diff --git a/test/data/circular_RNA.txt b/test/data/circular_RNA.txt