shinyhub

Welcome to the Yield10Bio Shiny App Hub

Repository for all Y10Bio Shiny Databases/tools

General Use Databases

1. Current General Use Database

Description:

This is the current master database. Current databases available through the master database include:

a. SeedDB
  List of all lab generated seeds including information about location, generation, and construct IDs.

b. Gene Expression DB
  Currently hosts the Kagale et al, 2014 *Camelina sativa* gene expression data

All available data is searchable, can be filtered by any column, and is downloadable as a CSV/Excel file

2. Working example of an 'Editable' Master Database

Description:

 This is a sample database working directly off of Y10Bio AWS S3 bucket. 
 Several columns witin this database are edittable by double clicking them and entering a new value. 
 This will be saved directly to the database permanently. 

Additonally, large additions can be uploaded and appended to this database (requires all column headers to match).

Gene expression resources/tools

1. Camelina sativa External Gene Expression Database

  a. Kagale et al, 2014 *Camelina sativa* gene expression data
  b. Correlation plots
  c. Data summaries
  d. Raw data files
  e. Annotation files

2. Soybean Gene Expression Database

  a. Internal field trial RNAseq experiment (Carlisle vs Wainfleet Field Trials)