chore: Manually update dependencies

[upbqdn]

Motivation

Prepare for releasing Zebra 1.8.

Specifications & References

#8321

Solution

• Remove unneeded entries from deny.toml's skip-tree.
• Run cargo update.

PR Author's Checklist

• The PR name will make sense to users.
• The PR provides a CHANGELOG summary.
• The solution is tested.
• The documentation is up to date.
• The PR has a priority label.

PR Reviewer's Checklist

• The PR Author's checklist is complete.
• The PR resolves the issue.

[upbqdn]

Output from cargo update:

cargo update
    Updating crates.io index
     Locking 80 packages to latest compatible versions
    Updating anstyle-query v1.0.3 -> v1.1.0
    Updating anyhow v1.0.82 -> v1.0.86
    Updating async-compression v0.4.9 -> v0.4.11
      Adding atomic-waker v1.1.2
    Updating autocfg v1.2.0 -> v1.3.0
    Updating bitflags v2.5.0 -> v2.6.0
    Updating bytemuck v1.15.0 -> v1.16.1
    Updating camino v1.1.6 -> v1.1.7
    Updating cc v1.0.96 -> v1.0.100
    Updating clang-sys v1.7.0 -> v1.8.1
    Updating clap v4.5.4 -> v4.5.7
    Updating clap_builder v4.5.2 -> v4.5.7
    Updating clap_derive v4.5.4 -> v4.5.5
    Updating clap_lex v0.7.0 -> v0.7.1
    Updating crc32fast v1.4.0 -> v1.4.2
    Updating crossbeam-channel v0.5.12 -> v0.5.13
    Updating crossbeam-utils v0.8.19 -> v0.8.20
    Updating darling v0.20.8 -> v0.20.9
    Updating darling_core v0.20.8 -> v0.20.9
    Updating darling_macro v0.20.8 -> v0.20.9
    Updating either v1.11.0 -> v1.12.0
    Updating errno v0.3.8 -> v0.3.9
    Updating fiat-crypto v0.2.8 -> v0.2.9
    Updating getrandom v0.2.14 -> v0.2.15
    Updating h2 v0.4.4 -> v0.4.5
    Updating http-body-util v0.1.1 -> v0.1.2
    Updating httparse v1.8.0 -> v1.9.4
    Updating hyper v0.14.28 -> v0.14.29 (latest: v1.3.1)
    Updating hyper-util v0.1.3 -> v0.1.5
    Updating instant v0.1.12 -> v0.1.13
      Adding itertools v0.12.1 (latest: v0.13.0)
    Updating lazy_static v1.4.0 -> v1.5.0
    Updating libc v0.2.154 -> v0.2.155
    Updating libloading v0.8.3 -> v0.8.4
    Updating libz-sys v1.1.16 -> v1.1.18
    Updating linux-raw-sys v0.4.13 -> v0.4.14 (latest: v0.6.4)
    Updating lz4-sys v1.9.4 -> v1.9.5
    Updating memchr v2.7.2 -> v2.7.4
    Updating miniz_oxide v0.7.2 -> v0.7.4
    Updating num-bigint v0.4.4 -> v0.4.5
    Updating num-traits v0.2.18 -> v0.2.19
    Updating parity-scale-codec v3.6.9 -> v3.6.12
    Updating parity-scale-codec-derive v3.6.9 -> v3.6.12
    Updating parking_lot v0.12.2 -> v0.12.3
    Updating petgraph v0.6.4 -> v0.6.5
    Updating plotters v0.3.5 -> v0.3.6
    Updating plotters-backend v0.3.5 -> v0.3.6
    Updating plotters-svg v0.3.5 -> v0.3.6
    Updating prettyplease v0.2.19 -> v0.2.20
    Updating proc-macro-crate v2.0.0 -> v3.1.0
    Updating proc-macro2 v1.0.84 -> v1.0.86
    Updating proptest v1.4.0 -> v1.5.0
    Updating prost-build v0.12.4 -> v0.12.6
    Updating prost-types v0.12.4 -> v0.12.6
    Updating redox_syscall v0.5.1 -> v0.5.2
    Updating regex v1.10.4 -> v1.10.5
    Updating regex-automata v0.4.6 -> v0.4.7
    Updating regex-syntax v0.8.3 -> v0.8.4
    Updating rustc-demangle v0.1.23 -> v0.1.24
    Updating rustversion v1.0.15 -> v1.0.17
    Updating ryu v1.0.17 -> v1.0.18
    Updating serde_json v1.0.117 -> v1.0.118
    Updating syn v2.0.66 -> v2.0.68
    Updating tinyvec v1.6.0 -> v1.6.1
    Updating tokio v1.37.0 -> v1.38.0
    Updating tokio-macros v2.2.0 -> v2.3.0
    Updating toml v0.8.13 -> v0.8.14
    Removing toml_edit v0.20.7
    Removing toml_edit v0.22.13
      Adding toml_edit v0.21.1 (latest: v0.22.14)
      Adding toml_edit v0.22.14
    Updating tracing-test v0.2.4 -> v0.2.5
    Updating tracing-test-macro v0.2.4 -> v0.2.5
    Updating unicode-width v0.1.12 -> v0.1.13
    Updating url v2.5.0 -> v2.5.2
    Updating utf8parse v0.2.1 -> v0.2.2
    Updating uuid v1.8.0 -> v1.9.1
    Updating winnow v0.6.7 -> v0.6.13
    Updating zcash_primitives v0.15.0 -> v0.15.1
    Updating zerocopy v0.7.32 -> v0.7.34
    Updating zerocopy-derive v0.7.32 -> v0.7.34
    Updating zeroize v1.7.0 -> v1.8.1