The R code used to analyze neonate and adult human platelet RNA-seq, Rib-seq and dose-response data.
- Workflow:
- RNAseq_final.R: the R script to preprocess RNA-seq data, perform DE analysis, GSEA and other statistical analyses, and visualize results
- Ribo_seq.R: the R script to preprocess Ribo-seq data, perform DE analysis, GSEA and other statistical analyses, and visualize results
- RNAseq_Riboseq_integrated.R: the R script to merge RNA-seq and Ribo-seq data, and perform comparison study on the integrated data
- functional_data_plots.R: the R script to analyze the platelet dose-response data, and visualize the results
- my_netgraph_functions.R: the R script including the modifed functions (from R package clusterProfiler) to generate network graphs for RNA-seq GSEA results
- my_plot_functions.R: the R script including functions to generate dose-response curves and correlation scatter plots for dose-response data