AlphaFold download function fails if nonexistent Uniprot ID entry / 404 error #225
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a-r-j
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Nov 10, 2022
* Catch AF2 download error #225 * update changelog * Update function signature * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Revert "[pre-commit.ci] auto fixes from pre-commit.com hooks" This reverts commit 5f27e51. * black * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
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When loading in data automatically (e.g. using
graphein.ml.ProteinGraphDataset), if a particular uniprot ID is given that doesn't have an AlphaFold entry (e.g."A9UF07", "P78527"), an exception is thrown bywget. This should be captured and used to returnNoneor similar as the filepath; and theDataSetshould exclude this from the data that will be then loaded as the downstream graphs will not be able to be created.The text was updated successfully, but these errors were encountered: