[WIP][Protein] add vector node features. #124

a-r-j · 2022-03-07T19:29:39Z

Reference Issues/PRs

#120 #122

What does this implement/fix? Explain your changes

Adds node feature functions for vector features. (CA<->CB, CA<->Side chain, seq_i<->seq_{i+1})

What testing did you do to verify the changes in this PR?

None yet. Tests WIP.

codecov-commenter · 2022-03-07T22:53:05Z

Codecov Report

Merging #124 (7fe3793) into master (8123f42) will increase coverage by 1.07%.
The diff coverage is 38.93%.

@@            Coverage Diff             @@
##           master     #124      +/-   ##
==========================================
+ Coverage   40.27%   41.34%   +1.07%     
==========================================
  Files          48       53       +5     
  Lines        2811     3340     +529     
==========================================
+ Hits         1132     1381     +249     
- Misses       1679     1959     +280

Impacted Files	Coverage Δ
graphein/grn/parse_trrust.py	`37.77% <ø> (ø)`
graphein/ml/conversion.py	`0.00% <0.00%> (ø)`
graphein/ml/diffusion.py	`0.00% <0.00%> (ø)`
graphein/ppi/edges.py	`100.00% <ø> (ø)`
graphein/ppi/graph_metadata.py	`0.00% <ø> (ø)`
graphein/ppi/graphs.py	`54.34% <ø> (ø)`
graphein/ppi/parse_biogrid.py	`75.00% <ø> (ø)`
graphein/ppi/visualisation.py	`0.00% <0.00%> (ø)`
graphein/protein/analysis.py	`0.00% <0.00%> (ø)`
graphein/protein/features/sequence/embeddings.py	`34.61% <ø> (-1.24%)`	⬇️
... and 36 more

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