Logging

[a-r-j]

Reference Issues/PRs

N/A

What does this implement/fix? Explain your changes

Refactors logging to use loguru consistently. Also provides global enable/disable.

What testing did you do to verify the changes in this PR?

WIP

Pull Request Checklist

• Added a note about the modification or contribution to the ./CHANGELOG.md file (if applicable)
• Added appropriate unit test functions in the ./graphein/tests/* directories (if applicable)
• Modify documentation in the corresponding Jupyter Notebook under ./notebooks/ (if applicable)
• Ran python -m py.test tests/ and make sure that all unit tests pass (for small modifications, it might be sufficient to only run the specific test file, e.g., python -m py.test tests/protein/test_graphs.py)
• Checked for style issues by running black . and isort .

[codecov-commenter]

Codecov Report

Base: 40.27% // Head: 47.51% // Increases project coverage by +7.23% 🎉

Coverage data is based on head (7e583c4) compared to base (8123f42).
Patch coverage: 51.15% of modified lines in pull request are covered.

Additional details and impacted files

@@            Coverage Diff             @@
##           master     #221      +/-   ##
==========================================
+ Coverage   40.27%   47.51%   +7.23%     
==========================================
  Files          48       85      +37     
  Lines        2811     5382    +2571     
==========================================
+ Hits         1132     2557    +1425     
- Misses       1679     2825    +1146     

Impacted Files	Coverage Δ
graphein/ml/diffusion.py	0.00% <0.00%> (ø)
graphein/ppi/graph_metadata.py	0.00% <0.00%> (ø)
graphein/ppi/visualisation.py	0.00% <0.00%> (ø)
graphein/protein/analysis.py	0.00% <0.00%> (ø)
graphein/protein/features/sequence/utils.py	28.00% <0.00%> (+3.00%)	⬆️
graphein/protein/features/utils.py	27.77% <0.00%> (ø)
graphein/utils/config.py	100.00% <ø> (+100.00%)	⬆️
graphein/utils/config_parser.py	100.00% <ø> (ø)
graphein/utils/utils.py	52.22% <ø> (+17.70%)	⬆️
graphein/ml/clustering.py	7.42% <7.42%> (ø)
... and 81 more

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[sonarcloud]

Kudos, SonarCloud Quality Gate passed!   

0 Bugs
0 Vulnerabilities
0 Security Hotspots
7 Code Smells

No Coverage information
1.1% Duplication