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add graph construction from a dataframe #264

Merged
merged 3 commits into from Feb 13, 2023
Merged

add graph construction from a dataframe #264

merged 3 commits into from Feb 13, 2023

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a-r-j
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@a-r-j a-r-j commented Feb 11, 2023

Reference Issues/PRs

N/A

What does this implement/fix? Explain your changes

Adds support for constructing protein graphs from a BioPandas Dataframe.

What testing did you do to verify the changes in this PR?

Local testing.

Pull Request Checklist

  • Added a note about the modification or contribution to the ./CHANGELOG.md file (if applicable)
  • Added appropriate unit test functions in the ./graphein/tests/* directories (if applicable)
  • Modify documentation in the corresponding Jupyter Notebook under ./notebooks/ (if applicable)
  • Ran python -m py.test tests/ and make sure that all unit tests pass (for small modifications, it might be sufficient to only run the specific test file, e.g., python -m py.test tests/protein/test_graphs.py)
  • Checked for style issues by running black . and isort .

@a-r-j a-r-j merged commit 87985a1 into master Feb 13, 2023
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sonarcloud bot commented Feb 13, 2023

SonarCloud Quality Gate failed.    Quality Gate failed

Bug A 0 Bugs
Vulnerability A 0 Vulnerabilities
Security Hotspot A 0 Security Hotspots
Code Smell B 1 Code Smell

No Coverage information No Coverage information
0.0% 0.0% Duplication

@a-r-j a-r-j deleted the graph_from_Df branch March 11, 2023 23:17
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