Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Improve data loading performance for FoldComp Datasets by 10x #313

Merged
merged 37 commits into from May 1, 2023

Conversation

a-r-j
Copy link
Owner

@a-r-j a-r-j commented May 1, 2023

Reference Issues/PRs

What does this implement/fix? Explain your changes

What testing did you do to verify the changes in this PR?

Pull Request Checklist

  • Added a note about the modification or contribution to the ./CHANGELOG.md file (if applicable)
  • Added appropriate unit test functions in the ./graphein/tests/* directories (if applicable)
  • Modify documentation in the corresponding Jupyter Notebook under ./notebooks/ (if applicable)
  • Ran python -m py.test tests/ and make sure that all unit tests pass (for small modifications, it might be sufficient to only run the specific test file, e.g., python -m py.test tests/protein/test_graphs.py)
  • Checked for style issues by running black . and isort .

a-r-j and others added 30 commits April 17, 2023 02:53
@codecov-commenter
Copy link

codecov-commenter commented May 1, 2023

Codecov Report

Patch coverage: 39.96% and project coverage change: +3.67 🎉

Comparison is base (8123f42) 40.27% compared to head (86bedcf) 43.94%.

📣 This organization is not using Codecov’s GitHub App Integration. We recommend you install it so Codecov can continue to function properly for your repositories. Learn more

Additional details and impacted files
@@            Coverage Diff             @@
##           master     #313      +/-   ##
==========================================
+ Coverage   40.27%   43.94%   +3.67%     
==========================================
  Files          48      113      +65     
  Lines        2811     7787    +4976     
==========================================
+ Hits         1132     3422    +2290     
- Misses       1679     4365    +2686     
Impacted Files Coverage Δ
graphein/ml/datasets/foldcomp_dataset.py 0.00% <0.00%> (ø)
graphein/ml/diffusion.py 0.00% <0.00%> (ø)
graphein/ml/metrics/__init__.py 0.00% <0.00%> (ø)
graphein/ml/metrics/gdt.py 0.00% <0.00%> (ø)
graphein/ml/metrics/tm_score.py 0.00% <0.00%> (ø)
graphein/ppi/graph_metadata.py 0.00% <0.00%> (ø)
graphein/ppi/visualisation.py 0.00% <0.00%> (ø)
graphein/protein/analysis.py 0.00% <0.00%> (ø)
graphein/protein/features/utils.py 27.77% <0.00%> (ø)
graphein/protein/folding_utils.py 0.00% <0.00%> (ø)
... and 95 more

☔ View full report in Codecov by Sentry.
📢 Do you have feedback about the report comment? Let us know in this issue.

@a-r-j a-r-j merged commit bd29a29 into master May 1, 2023
15 of 24 checks passed
@sonarcloud
Copy link

sonarcloud bot commented May 1, 2023

Kudos, SonarCloud Quality Gate passed!    Quality Gate passed

Bug A 0 Bugs
Vulnerability A 0 Vulnerabilities
Security Hotspot A 0 Security Hotspots
Code Smell A 0 Code Smells

No Coverage information No Coverage information
0.0% 0.0% Duplication

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

None yet

2 participants