BioInformatics. Autumn. 2021

This repository stores task solutions of BioInformatics course of autumn 2021.

Language: Python

Tasks

0. 1_1.py - Pattern Count Problem
1. 1_2.py - Frequent Words Problem
2. 1_3.py - Reverse Complement Problem
3. 2_1.py - Protein Translation Problem
4. 2_2.py - Peptide Encoding Problem
5. 2_3.py - Subpeptides Count Problem
6. 2_4.py - Generating Theoretical Spectrum Problem
7. 2_5.py - Counting Peptides with Given Mass Problem
8. 3_1.py - Cyclopeptide Sequencing Problem
9. 3_2.py - Cyclopeptide Scoring Problem
10. 3_3.py - Leaderboard Cyclopeptide Sequencing Problem
11. 4_1.py - Motif Enumeration Problem
12. 4_2.py - Median String Problem
13. 5_1.py - Profile-most Probable k-mer Problem
14. 5_2.py - Greedy Motif Search
15. 5_3.py - Greedy Motif Search with pseudocounts
16. 6_1.py - Change Problem
17. 6_2.py - Manhattan Tourist Problem
18. 6_3.py - Longest Common Subsequence Problem
19. 7_1.py - Global Alignment Problem
20. 7_2.py - Local Alignment Problem
21. 7_3.py - Edit Distance Problem
22. 8_1.py - String Composition Problem
23. 8_2.py - String Spelled by a Genome Path Problem
24. 8_3.py - Overlap Graph Problem
25. 8_4.py - The De Bruijn Graph from a String Problem
26. 9_1.py - Eulerian Cycle Problem
27. 9_2.py - Eulerian Path Problem
28. 9_3.py - String Reconstruction Problem

© Copyright Sidorova Alexandra, 2022