Periodic Tests #13
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name: Periodic Tests | |
on: | |
schedule: | |
# every day at 1:30 AM UTC | |
- cron: "30 1 * * *" | |
workflow_dispatch: | |
concurrency: | |
group: ${{ github.workflow }} | |
cancel-in-progress: true | |
jobs: | |
check-manifest: | |
runs-on: ubuntu-20.04 | |
steps: | |
- name: Checkout main | |
uses: actions/checkout@v4 | |
- name: Setup Python 3.10 | |
uses: actions/setup-python@v5 | |
with: | |
python-version: "3.10" | |
- name: Run check-manifest | |
uses: pre-commit/action@v3.0.1 | |
with: | |
extra_args: check-manifest --hook-stage manual | |
pre-commit: | |
runs-on: ubuntu-20.04 | |
steps: | |
- name: Checkout main | |
uses: actions/checkout@v4 | |
- name: Setup Python 3.10 | |
uses: actions/setup-python@v5 | |
with: | |
python-version: "3.10" | |
- name: Run pre-commit | |
uses: pre-commit/action@v3.0.1 | |
with: | |
extra_args: --all-files | |
run-notebook-examples: | |
runs-on: ubuntu-20.04 | |
steps: | |
- name: Checkout main | |
uses: actions/checkout@v4 | |
- name: Setup Python 3.10 | |
uses: actions/setup-python@v5 | |
with: | |
python-version: "3.10" | |
- name: Use numba cache to set env variables but not restore cache | |
uses: ./.github/actions/numba_cache | |
with: | |
cache_name: "run-notebook-examples" | |
runner_os: ${{ runner.os }} | |
python_version: "3.10" | |
restore_cache: "false" | |
- name: Install dependencies | |
uses: nick-fields/retry@v3 | |
with: | |
timeout_minutes: 30 | |
max_attempts: 3 | |
command: python -m pip install .[all_extras,binder,dev] | |
- name: Run example notebooks | |
run: build_tools/run_examples.sh false | |
shell: bash | |
- name: Save new cache | |
uses: actions/cache/save@v4 | |
with: | |
path: ${{ github.workspace }}/.numba_cache | |
# Save cache with the current date (ENV set in numba_cache action) | |
key: numba-run-notebook-examples-${{ runner.os }}-3.10-${{ env.CURRENT_DATE }} | |
test-nosoftdeps: | |
runs-on: ubuntu-20.04 | |
steps: | |
- name: Checkout main | |
uses: actions/checkout@v4 | |
- name: Setup Python 3.10 | |
uses: actions/setup-python@v5 | |
with: | |
python-version: "3.10" | |
- name: Use numba cache to set env variables but not restore cache | |
uses: ./.github/actions/numba_cache | |
with: | |
cache_name: "test-nosoftdeps" | |
runner_os: ${{ runner.os }} | |
python_version: "3.10" | |
restore_cache: "false" | |
- name: Install aeon and dependencies | |
uses: nick-fields/retry@v3 | |
with: | |
timeout_minutes: 30 | |
max_attempts: 3 | |
command: python -m pip install .[dev] | |
- name: Show dependencies | |
run: python -m pip list | |
- name: Run tests | |
run: | | |
python -m pytest -k 'test_all_estimators' --pyargs aeon.registry | |
python -m pytest -k 'test_check_estimator_does_not_raise' --pyargs aeon.utils | |
python -m pytest --pyargs aeon.testing.test_softdeps | |
- name: Save new cache | |
uses: actions/cache/save@v4 | |
with: | |
path: ${{ github.workspace }}/.numba_cache | |
# Save cache with the current date (ENV set in numba_cache action) | |
key: numba-test-nosoftdeps-${{ runner.os }}-3.10-${{ env.CURRENT_DATE }} | |
test-nosoftdeps-full: | |
runs-on: ubuntu-20.04 | |
steps: | |
- name: Checkout main | |
uses: actions/checkout@v4 | |
- name: Setup Python 3.10 | |
uses: actions/setup-python@v5 | |
with: | |
python-version: "3.10" | |
- name: Use numba cache to set env variables but not restore cache | |
uses: ./.github/actions/numba_cache | |
with: | |
cache_name: "test-nosoftdeps-full" | |
runner_os: ${{ runner.os }} | |
python_version: "3.10" | |
restore_cache: "false" | |
- name: Install aeon and dependencies | |
uses: nick-fields/retry@v3 | |
with: | |
timeout_minutes: 30 | |
max_attempts: 3 | |
command: python -m pip install .[dev] | |
- name: Show dependencies | |
run: python -m pip list | |
- name: Run tests | |
run: python -m pytest -k 'not TestAll' | |
- name: Save new cache | |
uses: actions/cache/save@v4 | |
with: | |
path: ${{ github.workspace }}/.numba_cache | |
# Save cache with the current date (ENV set in numba_cache action) | |
key: numba-test-nosoftdeps-full-${{ runner.os }}-3.10-${{ env.CURRENT_DATE }} | |
pytest: | |
runs-on: ${{ matrix.os }} | |
strategy: | |
fail-fast: false | |
matrix: | |
os: [ ubuntu-20.04, macOS-13, windows-2022 ] | |
python-version: [ "3.8", "3.9", "3.10", "3.11", "3.12" ] | |
steps: | |
- name: Checkout main | |
uses: actions/checkout@v4 | |
- name: Setup Python | |
uses: actions/setup-python@v5 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Use numba cache to set env variables but not restore cache | |
uses: ./.github/actions/numba_cache | |
with: | |
cache_name: "pytest" | |
runner_os: ${{ runner.os }} | |
python_version: ${{ matrix.python-version }} | |
restore_cache: "false" | |
- name: Install aeon and dependencies | |
uses: nick-fields/retry@v3 | |
with: | |
timeout_minutes: 30 | |
max_attempts: 3 | |
command: python -m pip install .[all_extras,dev] | |
- name: Show dependencies | |
run: python -m pip list | |
- name: Run tests | |
run: python -m pytest | |
- name: Save new cache | |
uses: actions/cache/save@v4 | |
with: | |
path: ${{ github.workspace }}/.numba_cache | |
# Save cache with the current date (ENV set in numba_cache action) | |
key: numba-pytest-${{ runner.os }}-${{ matrix.python-version}}-${{ env.CURRENT_DATE }} | |
codecov: | |
runs-on: ubuntu-20.04 | |
steps: | |
- name: Checkout main | |
uses: actions/checkout@v4 | |
- name: Setup Python 3.10 | |
uses: actions/setup-python@v5 | |
with: | |
python-version: "3.10" | |
- name: Disable Numba JIT | |
run: echo "NUMBA_DISABLE_JIT=1" >> $GITHUB_ENV | |
- name: Install aeon and dependencies | |
uses: nick-fields/retry@v3 | |
with: | |
timeout_minutes: 30 | |
max_attempts: 3 | |
command: python -m pip install .[all_extras,unstable_extras,dev] | |
- name: Show dependencies | |
run: python -m pip list | |
- name: Run tests | |
run: python -m pytest --cov=aeon --cov-report=xml --timeout 1800 | |
- name: Upload coverage to Codecov | |
uses: codecov/codecov-action@v4 | |
env: | |
CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} |