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VIBRANT
Aaruni Kaushik edited this page Jan 30, 2024
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VIBRANT is a virus identification tool in python.
The runtime is called github.anantharaman.vibrant/x86_64/1.2.1 and can be installed with maps -d github.anantharaman.vibrant/x86_64/1.2.1. Then execute using maps -r github.anantharaman.vibrant/x86_64/1.2.1.
The runtime includes all the prerequisite packages, and the database already installed and ready to go.
Vibrant is installed in /root/VIBRANT. Test by changing to the Vibrant directory, and running on the example data.
cd /root/VIBRANT
python3 VIBRANT_run.py example_data/mixed_example.fasta~/Public from outside the runtime is directly shared to /home/runtime/Public inside the runtime, and can be used to import input into the runtime.