3.3

ablab · Jun 13, 2023 · ec63766 · ec63766
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diff --git a/README.md b/README.md
@@ -8,7 +8,7 @@
 
 
 
-# IsoQuant 3.2 manual
+# IsoQuant 3.3 manual
 
 1. [About IsoQuant](#sec1) </br>
 1.1. [Supported data types](#sec1.1)</br>
@@ -72,7 +72,7 @@ IsoQuant consists of two stages, which generate its own output:
 splice site correction and abundance quantification for reference genes/transcripts.
 2. Transcript discovery. Reconstructs transcript models and performs abundance quantification for discovered isoforms.
 
-IsoQuant version 3.2.0 was released under GPLv2 on March 27th, 2023 and can be downloaded from [https://github.com/ablab/IsoQuant](https://github.com/ablab/IsoQuant).
+IsoQuant version 3.3.0 was released under GPLv2 on June 13th, 2023 and can be downloaded from [https://github.com/ablab/IsoQuant](https://github.com/ablab/IsoQuant).
 
 #### IsoQuant pipeline
 ![Pipeline](figs/isoquant_pipeline.png) 

diff --git a/VERSION b/VERSION
@@ -1 +1 @@
-3.2.0
+3.3.0
diff --git a/changelog.html b/changelog.html
@@ -2,6 +2,17 @@
 <title>IsoQuant changelog</title>
 <body>
 
+
+<h3>IsoQuant 3.3, 13 June 2023</h3>
+
+<p>Fixed read to novel models assignment.</p>
+
+<p>Improved command line options for providing multiple files, added <code>--prefix</code> option.</p>
+
+<p>Additional checks for various unusual cases in input GTFs.</p>
+
+<p>Do not output empty files when no GTF is provided.</p>
+
 <h3>IsoQuant 3.2, 27 March 2023</h3>
 
 <p>Unspliced novel transcripts are not reported by the default for ONT data, use <code>--report_novel_unspliced</code> to generate them.</p>