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LORIS-MRI Release v18.0.0

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@christinerogers christinerogers released this 03 Oct 20:29

This release of the Loris-MRI repo accompanies the LORIS 18.0 release and the current version of the DICOM Archive Tools repository for LORIS

New Features

  • Some study configuration settings migrated to the database from the $profile/prod file : #82, aces/Loris#2649, dicom-archive-tools#45. As of Loris 18.0, these settings can be accessed via Configuration module in the front-end (Admin menu) under the 'Imaging Pipeline' section.

  • The sample wrapper script deletemincsqlwrapper.pl (released in 17.0: #172) now has the option to re-insert deleted MINC files (#193). This script is also moved to a newly created directory example_scripts within the tools/ directory with a README for more details about the script functionality.

Install

  • Improved CentOS install: no more failure due to the DICOM toolkit #188
  • Ubuntu MINC toolkit installation command #190
  • Improved README #191

Improvements and Documentation:

  • Updated wiki for Imaging setup
  • Bug fix in the number of MINCs inserted when using minc_deletion.pl : #180, #185, #189
  • Better DICOM file validation #178 and more elaborate exclusion list when validating DICOM files #186, dicom-archive-#46
  • Better MySQL 5.7 compatibility #192, aces/Loris#2905.

Notes for Existing Projects

  • When updating your Loris-MRI code to the release branch, ensure your dicom-archive-tools code is updated at the same time.
  • After applying the Loris release patch, migrate settings from your prod file (Section II) to the database Config table. Run the new tools/ProdToConfig.pl script (once only) to perform this migration, check script/terminal output messages and verify the Config table settings afterwards.
    IMPORTANT: See #182 for complete instructions; note additional changes needed to the prod:get_DTI_Site_CandID_Visit routine. Also note that the $bin_dir setting is not migrated from the prod file to avoid duplication (since its value should already match the database ConfigSetting Loris-MRI code).