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0000-00-00-schema.sql
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0000-00-00-schema.sql
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-- MySQL dump 10.11
--
-- Host: localhost Database: smart_dummy
-- ------------------------------------------------------
-- Server version 5.0.45-Debian_1ubuntu3.3-log
/*!40101 SET @OLD_CHARACTER_SET_CLIENT=@@CHARACTER_SET_CLIENT */;
/*!40101 SET @OLD_CHARACTER_SET_RESULTS=@@CHARACTER_SET_RESULTS */;
/*!40101 SET @OLD_COLLATION_CONNECTION=@@COLLATION_CONNECTION */;
/*!40101 SET NAMES utf8 */;
/*!40103 SET @OLD_TIME_ZONE=@@TIME_ZONE */;
/*!40103 SET TIME_ZONE='+00:00' */;
/*!40014 SET @OLD_UNIQUE_CHECKS=@@UNIQUE_CHECKS, UNIQUE_CHECKS=0 */;
/*!40014 SET @OLD_FOREIGN_KEY_CHECKS=@@FOREIGN_KEY_CHECKS, FOREIGN_KEY_CHECKS=0 */;
/*!40101 SET @OLD_SQL_MODE=@@SQL_MODE, SQL_MODE='NO_AUTO_VALUE_ON_ZERO' */;
/*!40111 SET @OLD_SQL_NOTES=@@SQL_NOTES, SQL_NOTES=0 */;
--
-- Table structure for table `acknowledgements`
--
DROP TABLE IF EXISTS `acknowledgements`;
CREATE TABLE `acknowledgements` (
`ID` int(10) unsigned NOT NULL AUTO_INCREMENT,
`ordering` varchar(255) DEFAULT NULL,
`full_name` varchar(255) DEFAULT NULL,
`citation_name` varchar(255) DEFAULT NULL,
`affiliations` varchar(255) DEFAULT NULL,
`degrees` varchar(255) DEFAULT NULL,
`roles` varchar(255) DEFAULT NULL,
`start_date` date DEFAULT NULL,
`end_date` date DEFAULT NULL,
`present` enum('Yes', 'No') DEFAULT NULL,
PRIMARY KEY (`ID`)
) ENGINE=InnoDB DEFAULT CHARSET=utf8;
--
-- Dumping data for table `acknowledgements`
--
LOCK TABLES `acknowledgements` WRITE;
/*!40000 ALTER TABLE `acknowledgements` DISABLE KEYS */;
/*!40000 ALTER TABLE `acknowledgements` ENABLE KEYS */;
UNLOCK TABLES;
--
-- Table structure for table `candidate`
--
DROP TABLE IF EXISTS `candidate`;
CREATE TABLE `candidate` (
`ID` int(10) unsigned NOT NULL auto_increment,
`CandID` int(6) NOT NULL default '0',
`PSCID` varchar(255) NOT NULL default '',
`ExternalID` varchar(255) default NULL,
`DoB` date default NULL,
`EDC` date default NULL,
`Gender` enum('Male','Female') default NULL,
`CenterID` tinyint(2) unsigned NOT NULL default '0',
`ProjectID` int(11) default NULL,
`Ethnicity` varchar(255) default NULL,
`Active` enum('Y','N') NOT NULL default 'Y',
`Date_active` date default NULL,
`RegisteredBy` varchar(255) default NULL,
`UserID` varchar(255) NOT NULL default '',
`Date_registered` date default NULL,
`flagged_caveatemptor` enum('true','false') default 'false',
`flagged_reason` int(6),
`flagged_other` varchar(255) default NULL,
`flagged_other_status` enum('not_answered') default NULL,
`Testdate` timestamp NOT NULL default CURRENT_TIMESTAMP on update CURRENT_TIMESTAMP,
`Entity_type` enum('Human','Scanner') NOT NULL default 'Human',
`ProbandGender` enum('Male','Female') DEFAULT NULL,
`ProbandDoB` date DEFAULT NULL,
PRIMARY KEY (`CandID`),
UNIQUE KEY `ID` (`ID`),
UNIQUE KEY `ExternalID` (`ExternalID`),
KEY `FK_candidate_1` (`CenterID`),
CONSTRAINT `FK_candidate_1` FOREIGN KEY (`CenterID`) REFERENCES `psc` (`CenterID`)
) ENGINE=InnoDB DEFAULT CHARSET=utf8;
--
-- Dumping data for table `candidate`
--
LOCK TABLES `candidate` WRITE;
/*!40000 ALTER TABLE `candidate` DISABLE KEYS */;
/*!40000 ALTER TABLE `candidate` ENABLE KEYS */;
UNLOCK TABLES;
--
-- Table structure for table `caveat_options`
--
DROP TABLE IF EXISTS `caveat_options`;
CREATE TABLE `caveat_options` (
`ID` int(6),
`Description` varchar(255),
PRIMARY KEY (`ID`)
) ENGINE=InnoDB DEFAULT CHARSET=utf8;
--
-- Dumping data for table `caveat_options`
--
LOCK TABLES `caveat_options` WRITE;
/*!40000 ALTER TABLE `caveat_options` DISABLE KEYS */;
/*!40000 ALTER TABLE `caveat_options` ENABLE KEYS */;
UNLOCK TABLES;
-- Table structure for table `ImagingFileTypes`
DROP TABLE IF EXISTS `ImagingFileTypes`;
CREATE TABLE `ImagingFileTypes` (
`type` varchar(255) NOT NULL PRIMARY KEY
) ENGINE=InnoDB DEFAULT CHARSET=utf8;
INSERT INTO `ImagingFileTypes` VALUES
('mnc'),
('obj'),
('xfm'),
('xfmmnc'),
('imp'),
('vertstat'),
('xml'),
('txt'),
('nii'),
('nii.gz'),
('nrrd');
--
-- Table structure for table `document_repository`
--
DROP TABLE IF EXISTS `document_repository`;
CREATE TABLE `document_repository` (
`record_id` int(11) NOT NULL AUTO_INCREMENT,
`PSCID` varchar(255) DEFAULT NULL,
`Instrument` varchar(255) DEFAULT NULL,
`visitLabel` varchar(255) DEFAULT NULL,
`Date_taken` date DEFAULT NULL,
`Date_uploaded` timestamp NOT NULL DEFAULT CURRENT_TIMESTAMP ON UPDATE CURRENT_TIMESTAMP,
`Data_dir` varchar(255) DEFAULT NULL,
`File_name` varchar(255) DEFAULT NULL,
`File_type` varchar(20) DEFAULT NULL,
`version` varchar(20) DEFAULT NULL,
`File_size` bigint(20) unsigned DEFAULT NULL,
`uploaded_by` varchar(255) DEFAULT NULL,
`For_site` int(2) DEFAULT NULL,
`comments` text,
`multipart` enum('Yes','No') DEFAULT NULL,
`EARLI` tinyint(1) DEFAULT '0',
`hide_video` tinyint(1) DEFAULT '0',
`File_category` int(3) DEFAULT NULL,
PRIMARY KEY (`record_id`)
) ENGINE=InnoDB DEFAULT CHARSET=utf8;
--
-- Dumping data for table `document_repository`
--
LOCK TABLES `document_repository` WRITE;
/*!40000 ALTER TABLE `document_repository` DISABLE KEYS */;
/*!40000 ALTER TABLE `document_repository` ENABLE KEYS */;
UNLOCK TABLES;
--
-- Table structure for table `document_repository_categories`
--
DROP TABLE IF EXISTS `document_repository_categories`;
CREATE TABLE `document_repository_categories` (
`id` int(3) unsigned NOT NULL AUTO_INCREMENT,
`category_name` varchar(255) DEFAULT NULL,
`parent_id` int(3) DEFAULT '0',
`comments` text,
PRIMARY KEY (`id`)
) ENGINE=InnoDB AUTO_INCREMENT=1 DEFAULT CHARSET=utf8;
LOCK TABLES `document_repository_categories` WRITE;
/*!40000 ALTER TABLE `document_repository_categories` DISABLE KEYS */;
/*!40000 ALTER TABLE `document_repository_categories` ENABLE KEYS */;
UNLOCK TABLES;
--
-- Table structure for table `examiners`
--
DROP TABLE IF EXISTS `examiners`;
CREATE TABLE `examiners` (
`examinerID` int(10) unsigned NOT NULL auto_increment,
`full_name` varchar(255) default NULL,
`centerID` tinyint(2) unsigned default NULL,
`radiologist` tinyint(1) default NULL,
`active` enum('Y','N') NOT NULL DEFAULT 'Y',
`pending_approval` enum('Y','N') NOT NULL DEFAULT 'N',
PRIMARY KEY (`examinerID`),
UNIQUE KEY `full_name` (`full_name`,`centerID`),
KEY `FK_examiners_1` (`centerID`),
CONSTRAINT `FK_examiners_1` FOREIGN KEY (`centerID`) REFERENCES `psc` (`CenterID`)
) ENGINE=InnoDB DEFAULT CHARSET=utf8;
--
-- Dumping data for table `examiners`
--
LOCK TABLES `examiners` WRITE;
/*!40000 ALTER TABLE `examiners` DISABLE KEYS */;
/*!40000 ALTER TABLE `examiners` ENABLE KEYS */;
UNLOCK TABLES;
--
-- Table structure for table `feedback_bvl_entry`
--
DROP TABLE IF EXISTS `feedback_bvl_entry`;
CREATE TABLE `feedback_bvl_entry` (
`ID` int(11) unsigned NOT NULL auto_increment,
`FeedbackID` int(11) unsigned default NULL,
`Comment` text,
`UserID` varchar(255) default NULL,
`Testdate` timestamp NOT NULL default CURRENT_TIMESTAMP on update CURRENT_TIMESTAMP,
PRIMARY KEY (`ID`),
KEY `FK_feedback_bvl_entry_1` (`FeedbackID`),
CONSTRAINT `FK_feedback_bvl_entry_1` FOREIGN KEY (`FeedbackID`) REFERENCES `feedback_bvl_thread` (`FeedbackID`)
) ENGINE=InnoDB DEFAULT CHARSET=utf8;
--
-- Dumping data for table `feedback_bvl_entry`
--
LOCK TABLES `feedback_bvl_entry` WRITE;
/*!40000 ALTER TABLE `feedback_bvl_entry` DISABLE KEYS */;
/*!40000 ALTER TABLE `feedback_bvl_entry` ENABLE KEYS */;
UNLOCK TABLES;
--
-- Table structure for table `feedback_bvl_thread`
--
DROP TABLE IF EXISTS `feedback_bvl_thread`;
CREATE TABLE `feedback_bvl_thread` (
`FeedbackID` int(11) unsigned NOT NULL auto_increment,
`CandID` int(6) default NULL,
`SessionID` int(11) unsigned default NULL,
`CommentID` varchar(255) default NULL,
`Feedback_level` enum('profile','visit','instrument') NOT NULL default 'profile',
`Feedback_type` int(11) unsigned default NULL,
`Public` enum('N','Y') NOT NULL default 'N',
`Status` enum('opened','answered','closed','comment') NOT NULL default 'opened',
`Active` enum('N','Y') NOT NULL default 'N',
`Date_taken` date default NULL,
`UserID` varchar(255) NOT NULL default '',
`Testdate` timestamp NOT NULL default CURRENT_TIMESTAMP on update CURRENT_TIMESTAMP,
`FieldName` text default NULL,
PRIMARY KEY (`FeedbackID`),
KEY `FK_feedback_bvl_thread_1` (`Feedback_type`),
CONSTRAINT `FK_feedback_bvl_thread_1` FOREIGN KEY (`Feedback_type`) REFERENCES `feedback_bvl_type` (`Feedback_type`)
) ENGINE=InnoDB DEFAULT CHARSET=utf8;
--
-- Dumping data for table `feedback_bvl_thread`
--
LOCK TABLES `feedback_bvl_thread` WRITE;
/*!40000 ALTER TABLE `feedback_bvl_thread` DISABLE KEYS */;
/*!40000 ALTER TABLE `feedback_bvl_thread` ENABLE KEYS */;
UNLOCK TABLES;
--
-- Table structure for table `feedback_bvl_type`
--
DROP TABLE IF EXISTS `feedback_bvl_type`;
CREATE TABLE `feedback_bvl_type` (
`Feedback_type` int(11) unsigned NOT NULL auto_increment,
`Name` varchar(100) NOT NULL default '',
`Description` text,
PRIMARY KEY (`Feedback_type`),
UNIQUE KEY `Name` (`Name`)
) ENGINE=InnoDB AUTO_INCREMENT=3 DEFAULT CHARSET=utf8;
--
-- Dumping data for table `feedback_bvl_type`
--
LOCK TABLES `feedback_bvl_type` WRITE;
/*!40000 ALTER TABLE `feedback_bvl_type` DISABLE KEYS */;
INSERT INTO `feedback_bvl_type` VALUES
(1,'Input','Input Errors'),
(2,'Scoring','Scoring Errors');
/*!40000 ALTER TABLE `feedback_bvl_type` ENABLE KEYS */;
UNLOCK TABLES;
--
-- Table structure for table `feedback_mri_comment_types`
--
DROP TABLE IF EXISTS `feedback_mri_comment_types`;
CREATE TABLE `feedback_mri_comment_types` (
`CommentTypeID` int(11) unsigned NOT NULL auto_increment,
`CommentName` varchar(255) NOT NULL default '',
`CommentType` enum('volume','visit') NOT NULL default 'volume',
`CommentStatusField` varchar(255) NOT NULL default '',
PRIMARY KEY (`CommentTypeID`)
) ENGINE=InnoDB AUTO_INCREMENT=8 DEFAULT CHARSET=utf8;
--
-- Dumping data for table `feedback_mri_comment_types`
--
LOCK TABLES `feedback_mri_comment_types` WRITE;
/*!40000 ALTER TABLE `feedback_mri_comment_types` DISABLE KEYS */;
INSERT INTO `feedback_mri_comment_types` VALUES
(1,'Geometric distortion','volume','a:2:{s:5:\"field\";s:20:\"Geometric_distortion\";s:6:\"values\";a:5:{i:0;s:0:\"\";i:1;s:4:\"Good\";i:2;s:4:\"Fair\";i:3;s:4:\"Poor\";i:4;s:12:\"Unacceptable\";}}'),
(2,'Intensity artifact','volume','a:2:{s:5:\"field\";s:18:\"Intensity_artifact\";s:6:\"values\";a:5:{i:0;s:0:\"\";i:1;s:4:\"Good\";i:2;s:4:\"Fair\";i:3;s:4:\"Poor\";i:4;s:12:\"Unacceptable\";}}'),
(3,'Movement artifact','volume','a:2:{s:5:\"field\";s:30:\"Movement_artifacts_within_scan\";s:6:\"values\";a:5:{i:0;s:0:\"\";i:1;s:4:\"None\";i:2;s:15:\"Slight Movement\";i:3;s:12:\"Poor Quality\";i:4;s:12:\"Unacceptable\";}}'),
(4,'Packet movement artifact','volume','a:2:{s:5:\"field\";s:31:\"Movement_artifacts_between_packets\";s:6:\"values\";a:5:{i:0;s:0:\"\";i:1;s:4:\"None\";i:2;s:15:\"Slight Movement\";i:3;s:12:\"Poor Quality\";i:4;s:12:\"Unacceptable\";}}'),
(5,'Coverage','volume','a:2:{s:5:\"field\";s:8:\"Coverage\";s:6:\"values\";a:5:{i:0;s:0:\"\";i:1;s:4:\"Good\";i:2;s:4:\"Fair\";i:3;s:5:\"Limit\";i:4;s:12:\"Unacceptable\";}}'), (6,'Overall','volume',''),
(7,'Subject','visit',''),
(8,'Dominant Direction Artifact (DWI ONLY)','volume','a:2:{s:5:"field";s:14:"Color_Artifact";s:6:"values";a:5:{i:0;s:0:"";i:1;s:4:"Good";i:2;s:4:"Fair";i:3;s:4:"Poor";i:4;s:12:"Unacceptable";}}'),
(9,'Entropy Rating (DWI ONLY)','volume','a:2:{s:5:"field";s:7:"Entropy";s:6:"values";a:5:{i:0;s:0:"";i:1;s:10:"Acceptable";i:2;s:10:"Suspicious";i:3;s:12:"Unacceptable";i:4;s:13:"Not Available";}}');
/*!40000 ALTER TABLE `feedback_mri_comment_types` ENABLE KEYS */;
UNLOCK TABLES;
--
-- Table structure for table `feedback_mri_predefined_comments`
--
DROP TABLE IF EXISTS `feedback_mri_predefined_comments`;
CREATE TABLE `feedback_mri_predefined_comments` (
`PredefinedCommentID` int(11) unsigned NOT NULL auto_increment,
`CommentTypeID` int(11) unsigned NOT NULL default '0',
`Comment` text NOT NULL,
PRIMARY KEY (`PredefinedCommentID`),
KEY `CommentType` (`CommentTypeID`),
CONSTRAINT `FK_feedback_mri_predefined_comments_1` FOREIGN KEY (`CommentTypeID`) REFERENCES `feedback_mri_comment_types` (`CommentTypeID`)
) ENGINE=InnoDB AUTO_INCREMENT=24 DEFAULT CHARSET=utf8;
--
-- Dumping data for table `feedback_mri_predefined_comments`
--
LOCK TABLES `feedback_mri_predefined_comments` WRITE;
/*!40000 ALTER TABLE `feedback_mri_predefined_comments` DISABLE KEYS */;
INSERT INTO `feedback_mri_predefined_comments` VALUES
(1,2,'missing slices'),
(2,2,'reduced dynamic range due to bright artifact/pixel'),
(3,2,'slice to slice intensity differences'),
(4,2,'noisy scan'),
(5,2,'susceptibilty artifact above the ear canals.'),
(6,2,'susceptibilty artifact due to dental work'),
(7,2,'sagittal ghosts'),
(8,3,'slight ringing artefacts'),
(9,3,'severe ringing artefacts'),
(10,3,'movement artefact due to eyes'),
(11,3,'movement artefact due to carotid flow'),
(12,4,'slight movement between packets'),
(13,4,'large movement between packets'),
(14,5,'Large AP wrap around, affecting brain'),
(15,5,'Medium AP wrap around, no affect on brain'),
(16,5,'Small AP wrap around, no affect on brain'),
(17,5,'Too tight LR, cutting into scalp'),
(18,5,'Too tight LR, affecting brain'),
(19,5,'Top of scalp cut off'),
(20,5,'Top of brain cut off'),
(21,5,'Base of cerebellum cut off'),
(22,5,'missing top third - minc conversion?'),
(23,6,'copy of prev data'),
(24,2,"checkerboard artifact"),
(25,2,"horizontal intensity striping (Venetian blind effect, DWI ONLY)"),
(26,2,"diagonal striping (NRRD artifact, DWI ONLY)"),
(27,2,"high intensity in direction of acquisition"),
(28,2,"signal loss (dark patches)"),
(29,8,"red artifact"),
(30,8,"green artifact"),
(31,8,"blue artifact"),
(32,6,"Too few remaining gradients (DWI ONLY)"),
(33,6,"No b0 remaining after DWIPrep (DWI ONLY)"),
(34,6,"No gradient information available from scanner (DWI ONLY)"),
(35,6,"Incorrect diffusion direction (DWI ONLY)"),
(36,6,"Duplicate series"),
(37,3,"slice wise artifact (DWI ONLY)"),
(38,3,"gradient wise artifact (DWI ONLY)"),
(39,2,"susceptibility artifact due to anatomy");
/*!40000 ALTER TABLE `feedback_mri_predefined_comments` ENABLE KEYS */;
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--
-- Table structure for table `feedback_mri_comments`
--
DROP TABLE IF EXISTS `feedback_mri_comments`;
CREATE TABLE `feedback_mri_comments` (
`CommentID` int(11) unsigned NOT NULL auto_increment,
`FileID` int(10) unsigned default NULL,
`SeriesUID` varchar(64) default NULL,
`EchoTime` double default NULL,
`SessionID` int(10) unsigned default NULL,
`CommentTypeID` int(11) unsigned NOT NULL default '0',
`PredefinedCommentID` int(11) unsigned default NULL,
`Comment` text,
`ChangeTime` timestamp NOT NULL default CURRENT_TIMESTAMP on update CURRENT_TIMESTAMP,
PRIMARY KEY (`CommentID`),
KEY `FK_feedback_mri_comments_1` (`CommentTypeID`),
KEY `FK_feedback_mri_comments_2` (`PredefinedCommentID`),
KEY `FK_feedback_mri_comments_3` (`FileID`),
KEY `FK_feedback_mri_comments_4` (`SessionID`),
CONSTRAINT `FK_feedback_mri_comments_4` FOREIGN KEY (`SessionID`) REFERENCES `session` (`ID`),
CONSTRAINT `FK_feedback_mri_comments_1` FOREIGN KEY (`CommentTypeID`) REFERENCES `feedback_mri_comment_types` (`CommentTypeID`),
CONSTRAINT `FK_feedback_mri_comments_2` FOREIGN KEY (`PredefinedCommentID`) REFERENCES `feedback_mri_predefined_comments` (`PredefinedCommentID`),
CONSTRAINT `FK_feedback_mri_comments_3` FOREIGN KEY (`FileID`) REFERENCES `files` (`FileID`)
) ENGINE=InnoDB DEFAULT CHARSET=utf8;
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-- Dumping data for table `feedback_mri_comments`
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--
-- Table structure for table `mri_processing_protocol`
--
DROP TABLE IF EXISTS `mri_processing_protocol`;
/*!40101 SET @saved_cs_client = @@character_set_client */;
/*!40101 SET character_set_client = utf8 */;
CREATE TABLE `mri_processing_protocol` (
`ProcessProtocolID` int(11) unsigned NOT NULL AUTO_INCREMENT,
`ProtocolFile` varchar(255) NOT NULL DEFAULT '',
`FileType` varchar(255) DEFAULT NULL,
`Tool` varchar(255) NOT NULL DEFAULT '',
`InsertTime` int(10) unsigned NOT NULL DEFAULT '0',
`md5sum` varchar(32) DEFAULT NULL,
PRIMARY KEY (`ProcessProtocolID`),
CONSTRAINT `FK_mri_processing_protocol_FileTypes` FOREIGN KEY (`FileType`) REFERENCES `ImagingFileTypes`(`type`)
) ENGINE=InnoDB DEFAULT CHARSET=utf8;
/*!40101 SET character_set_client = @saved_cs_client */;
--
-- Table structure for table `mri_scanner`
--
DROP TABLE IF EXISTS `mri_scanner`;
CREATE TABLE `mri_scanner` (
`ID` int(11) unsigned NOT NULL auto_increment,
`Manufacturer` varchar(255) default NULL,
`Model` varchar(255) default NULL,
`Serial_number` varchar(255) default NULL,
`Software` varchar(255) default NULL,
`CandID` int(11) default NULL,
PRIMARY KEY (`ID`),
KEY `FK_mri_scanner_1` (`CandID`),
CONSTRAINT `FK_mri_scanner_1` FOREIGN KEY (`CandID`) REFERENCES `candidate` (`CandID`)
) ENGINE=InnoDB DEFAULT CHARSET=utf8;
--
-- Dumping data for table `mri_scanner`
--
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INSERT INTO `mri_scanner` VALUES (0,NULL,NULL,NULL,NULL,NULL);
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--
-- Table structure for table `files`
--
DROP TABLE IF EXISTS `files`;
CREATE TABLE `files` (
`FileID` int(10) unsigned NOT NULL auto_increment,
`SessionID` int(10) unsigned NOT NULL default '0',
`File` varchar(255) NOT NULL default '',
`SeriesUID` varchar(64) DEFAULT NULL,
`EchoTime` double DEFAULT NULL,
`CoordinateSpace` varchar(255) default NULL,
`OutputType` varchar(255) NOT NULL default '',
`AcquisitionProtocolID` int(10) unsigned default NULL,
`FileType` varchar(255) default NULL,
`PendingStaging` tinyint(1) NOT NULL default '0',
`InsertedByUserID` varchar(255) NOT NULL default '',
`InsertTime` int(10) unsigned NOT NULL default '0',
`SourcePipeline` varchar(255),
`PipelineDate` date,
`SourceFileID` int(10) unsigned DEFAULT '0',
`ProcessProtocolID` int(11) unsigned,
`Caveat` tinyint(1) default NULL,
`TarchiveSource` int(11) default NULL,
`ScannerID` int(10) unsigned default NULL,
`AcqOrderPerModality` int(11) default NULL,
PRIMARY KEY (`FileID`),
KEY `file` (`File`),
KEY `sessionid` (`SessionID`),
KEY `outputtype` (`OutputType`),
KEY `filetype_outputtype` (`FileType`,`OutputType`),
KEY `staging_filetype_outputtype` (`PendingStaging`,`FileType`,`OutputType`),
KEY `AcquiIndex` (`AcquisitionProtocolID`,`SessionID`),
KEY `scannerid` (`ScannerID`),
CONSTRAINT `FK_files_2` FOREIGN KEY (`AcquisitionProtocolID`) REFERENCES `mri_scan_type` (`ID`),
CONSTRAINT `FK_files_1` FOREIGN KEY (`SessionID`) REFERENCES `session` (`ID`),
CONSTRAINT `FK_files_3` FOREIGN KEY (`SourceFileID`) REFERENCES `files` (`FileID`),
CONSTRAINT `FK_files_4` FOREIGN KEY (`ProcessProtocolID`) REFERENCES `mri_processing_protocol` (`ProcessProtocolID`),
CONSTRAINT `FK_files_FileTypes` FOREIGN KEY (`FileType`) REFERENCES `ImagingFileTypes`(`type`),
CONSTRAINT `FK_files_scannerID` FOREIGN KEY (`ScannerID`) REFERENCES `mri_scanner` (`ID`)
) ENGINE=InnoDB DEFAULT CHARSET=utf8;
DROP TABLE IF EXISTS `files_qcstatus`;
CREATE TABLE `files_qcstatus` (
FileQCID int(11) PRIMARY KEY auto_increment,
FileID int(11) UNIQUE NULL,
SeriesUID varchar(64) DEFAULT NULL,
EchoTime double DEFAULT NULL,
QCStatus enum('Pass', 'Fail'),
QCFirstChangeTime int(10) unsigned,
QCLastChangeTime int(10) unsigned,
Selected enum('true', 'false') DEFAULT NULL
) ENGINE=InnoDB DEFAULT CHARSET=utf8;
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-- Dumping data for table `files`
--
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--
-- Table structure for table `flag`
--
DROP TABLE IF EXISTS `flag`;
CREATE TABLE `flag` (
`ID` int(10) unsigned NOT NULL auto_increment,
`SessionID` int(10) unsigned NOT NULL default '0',
`Test_name` varchar(255) NOT NULL default '',
`CommentID` varchar(255) NOT NULL default '',
`Data_entry` enum('In Progress','Complete') default NULL,
`Administration` enum('None','Partial','All') default NULL,
`Validity` enum('Questionable','Invalid','Valid') default NULL,
`Exclusion` enum('Fail','Pass') default NULL,
`Flag_status` enum('P','Y','N','F') default NULL,
`UserID` varchar(255) default NULL,
`Testdate` timestamp NOT NULL default CURRENT_TIMESTAMP on update CURRENT_TIMESTAMP,
PRIMARY KEY (`CommentID`),
KEY `Status` (`Flag_status`),
KEY `flag_ID` (`ID`),
KEY `flag_SessionID` (`SessionID`),
KEY `flag_Test_name` (`Test_name`),
KEY `flag_Exclusion` (`Exclusion`),
KEY `flag_Data_entry` (`Data_entry`),
KEY `flag_Validity` (`Validity`),
KEY `flag_Administration` (`Administration`),
KEY `flag_UserID` (`UserID`),
CONSTRAINT `FK_flag_1` FOREIGN KEY (`SessionID`) REFERENCES `session` (`ID`) ON DELETE CASCADE ON UPDATE CASCADE,
CONSTRAINT `FK_flag_2` FOREIGN KEY (`Test_name`) REFERENCES `test_names` (`Test_name`)
) ENGINE=InnoDB DEFAULT CHARSET=utf8;
--
-- Dumping data for table `flag`
--
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--
-- Table structure for table `history`
--
DROP TABLE IF EXISTS `history`;
CREATE TABLE `history` (
`id` int(11) NOT NULL auto_increment,
`tbl` varchar(255) NOT NULL default '',
`col` varchar(255) NOT NULL default '',
`old` text,
`new` text,
`primaryCols` text,
`primaryVals` text,
`changeDate` timestamp NOT NULL default CURRENT_TIMESTAMP on update CURRENT_TIMESTAMP,
`userID` varchar(255) NOT NULL default '',
`type` char(1),
PRIMARY KEY (`id`)
) ENGINE=InnoDB DEFAULT CHARSET=utf8 COMMENT='This table keeps track of ongoing changes in the database. ';
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-- Dumping data for table `history`
--
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--
-- Table structure for table `instrument_subtests`
--
DROP TABLE IF EXISTS `instrument_subtests`;
CREATE TABLE `instrument_subtests` (
`ID` int(11) NOT NULL auto_increment,
`Test_name` varchar(255) NOT NULL default '',
`Subtest_name` varchar(255) NOT NULL default '',
`Description` varchar(255) NOT NULL default '',
`Order_number` int(11) NOT NULL default '0',
PRIMARY KEY (`ID`),
KEY `FK_instrument_subtests_1` (`Test_name`),
CONSTRAINT `FK_instrument_subtests_1` FOREIGN KEY (`Test_name`) REFERENCES `test_names` (`Test_name`)
) ENGINE=InnoDB DEFAULT CHARSET=utf8;
--
-- Dumping data for table `instrument_subtests`
--
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--
-- Table structure for table `mri_acquisition_dates`
--
DROP TABLE IF EXISTS `mri_acquisition_dates`;
CREATE TABLE `mri_acquisition_dates` (
`SessionID` int(10) unsigned NOT NULL default '0',
`AcquisitionDate` date default NULL,
PRIMARY KEY (`SessionID`),
CONSTRAINT `FK_mri_acquisition_dates_1` FOREIGN KEY (`SessionID`) REFERENCES `session` (`ID`)
) ENGINE=InnoDB DEFAULT CHARSET=utf8;
--
-- Dumping data for table `mri_acquisition_dates`
--
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--
-- Table structure for table `mri_protocol`
--
DROP TABLE IF EXISTS `mri_protocol`;
CREATE TABLE `mri_protocol` (
`ID` int(11) unsigned NOT NULL auto_increment,
`Center_name` varchar(4) NOT NULL default '',
`ScannerID` int(10) unsigned NOT NULL default '0',
`Scan_type` int(10) unsigned NOT NULL default '0',
`TR_range` varchar(255) default NULL,
`TE_range` varchar(255) default NULL,
`TI_range` varchar(255) default NULL,
`slice_thickness_range` varchar(255) default NULL,
`FoV_x_range` varchar(255) default NULL,
`FoV_y_range` varchar(255) default NULL,
`FoV_z_range` varchar(255) default NULL,
`xspace_range` varchar(255) default NULL,
`yspace_range` varchar(255) default NULL,
`zspace_range` varchar(255) default NULL,
`xstep_range` varchar(255) default NULL,
`ystep_range` varchar(255) default NULL,
`zstep_range` varchar(255) default NULL,
`time_range` varchar(255) default NULL,
`series_description_regex` varchar(255) default NULL,
PRIMARY KEY (`ID`),
KEY `FK_mri_protocol_1` (`ScannerID`),
CONSTRAINT `FK_mri_protocol_1` FOREIGN KEY (`ScannerID`) REFERENCES `mri_scanner` (`ID`)
) ENGINE=InnoDB AUTO_INCREMENT=1000 DEFAULT CHARSET=utf8;
--
-- Dumping data for table `mri_protocol`
--
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/*!40000 ALTER TABLE `mri_protocol` DISABLE KEYS */;
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INSERT INTO mri_protocol (Center_name,Scan_type,TR_range,TE_range,time_range) VALUES ('ZZZZ',48,'8000-14000','80-130','0-200');
INSERT INTO mri_protocol (Center_name,Scan_type,TR_range,TE_range,time_range) VALUES ('ZZZZ',40,'1900-2700','10-30','0-500');
INSERT INTO mri_protocol (Center_name,Scan_type,TR_range,TE_range,time_range) VALUES ('ZZZZ',44,'2000-2500','2-5',NULL);
INSERT INTO mri_protocol (Center_name,Scan_type,TR_range,TE_range,time_range) VALUES ('ZZZZ',45,'3000-9000','100-550',NULL);
UNLOCK TABLES;
--
-- Table structure for table `mri_scan_type`
--
DROP TABLE IF EXISTS `mri_scan_type`;
CREATE TABLE `mri_scan_type` (
`ID` int(11) unsigned NOT NULL auto_increment,
`Scan_type` text NOT NULL,
PRIMARY KEY (`ID`)
) ENGINE=InnoDB AUTO_INCREMENT=1001 DEFAULT CHARSET=utf8;
--
-- Dumping data for table `mri_scan_type`
--
LOCK TABLES `mri_scan_type` WRITE;
/*!40000 ALTER TABLE `mri_scan_type` DISABLE KEYS */;
INSERT INTO `mri_scan_type` VALUES
(40,'fMRI'),
(41,'flair'),
(44,'t1'),
(45,'t2'),
(46,'pd'),
(47,'mrs'),
(48,'dti'),
(49,'t1relx'),
(50,'dct2e1'),
(51,'dct2e2'),
(52,'scout'),
(53,'tal_msk'),
(54,'cocosco_cls'),
(55,'clean_cls'),
(56,'em_cls'),
(57,'seg'),
(58,'white_matter'),
(59,'gray_matter'),
(60,'csf_matter'),
(61,'nlr_masked'),
(62,'pve'),
(999,'unknown'),
(1000,'NA');
/*!40000 ALTER TABLE `mri_scan_type` ENABLE KEYS */;
UNLOCK TABLES;
--
-- Table structure for table `notification_spool`
--
DROP TABLE IF EXISTS `notification_spool`;
CREATE TABLE `notification_spool` (
`NotificationID` int(11) NOT NULL auto_increment,
`NotificationTypeID` int(11) NOT NULL default '0',
`ProcessID` int(11) NOT NULL DEFAULT '0',
`TimeSpooled` datetime DEFAULT NULL,
`Message` text,
`Error` enum('Y','N') default NULL,
`Verbose` enum('Y','N') NOT NULL DEFAULT 'N',
`Sent` enum('N','Y') NOT NULL default 'N',
`CenterID` tinyint(2) unsigned default NULL,
`Origin` varchar(255) DEFAULT NULL,
PRIMARY KEY (`NotificationID`),
KEY `FK_notification_spool_1` (`NotificationTypeID`),
KEY `FK_notification_spool_2` (`CenterID`),
CONSTRAINT `FK_notification_spool_2` FOREIGN KEY (`CenterID`) REFERENCES `psc` (`CenterID`),
CONSTRAINT `FK_notification_spool_1` FOREIGN KEY (`NotificationTypeID`) REFERENCES `notification_types` (`NotificationTypeID`)
) ENGINE=InnoDB DEFAULT CHARSET=utf8;
--
-- Dumping data for table `notification_spool`
--
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--
-- Table structure for table `notification_types`
--
DROP TABLE IF EXISTS `notification_types`;
CREATE TABLE `notification_types` (
`NotificationTypeID` int(11) NOT NULL auto_increment,
`Type` varchar(255) NOT NULL default '',
`private` tinyint(1) default '0',
`Description` text,
PRIMARY KEY (`NotificationTypeID`)
) ENGINE=InnoDB AUTO_INCREMENT=11 DEFAULT CHARSET=utf8;
--
-- Dumping data for table `notification_types`
--
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/*!40000 ALTER TABLE `notification_types` DISABLE KEYS */;
INSERT INTO `notification_types` (Type,private,Description) VALUES
('mri new study',0,'New studies processed by the MRI upload handler'),
('mri new series',0,'New series processed by the MRI upload handler'),
('mri upload handler emergency',1,'MRI upload handler emergencies'),
('mri staging required',1,'New studies received by the MRI upload handler that require staging'),
('mri invalid study',0,'Incorrectly labelled studies received by the MRI upload handler'),
('hardcopy request',0,'Hardcopy requests'),
('visual bvl qc',0,'Timepoints selected for visual QC'),
('mri qc status',0,'MRI QC Status change');
INSERT INTO notification_types (Type,private,Description) VALUES
('minc insertion',1,'Insertion of the mincs into the mri-table'),
('tarchive loader',1,'calls specific Insertion Scripts'),
('tarchive validation',1,'Validation of the dicoms After uploading'),
('mri upload runner',1,'Validation of DICOMS before uploading'),
('mri upload processing class',1,'Validation and execution of DicomTar.pl and TarchiveLoader');
/*!40000 ALTER TABLE `notification_types` ENABLE KEYS */;
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--
-- Table structure for table `parameter_candidate`
--
DROP TABLE IF EXISTS `parameter_candidate`;
CREATE TABLE `parameter_candidate` (
`ParameterCandidateID` int(10) unsigned NOT NULL auto_increment,
`CandID` int(6) NOT NULL default '0',
`ParameterTypeID` int(10) unsigned NOT NULL default '0',
`Value` varchar(255) default NULL,
`InsertTime` int(10) unsigned NOT NULL default '0',
PRIMARY KEY (`ParameterCandidateID`),
KEY `candidate_type` (`CandID`,`ParameterTypeID`),
KEY `parameter_value` (`ParameterTypeID`,`Value`(64)),
CONSTRAINT `FK_parameter_candidate_2` FOREIGN KEY (`CandID`) REFERENCES `candidate` (`CandID`),
CONSTRAINT `FK_parameter_candidate_1` FOREIGN KEY (`ParameterTypeID`) REFERENCES `parameter_type` (`ParameterTypeID`)
) ENGINE=InnoDB DEFAULT CHARSET=utf8 COMMENT='per-candidate equivalent of parameter_session';
--
-- Dumping data for table `parameter_candidate`
--
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--
-- Table structure for table `parameter_file`
--
DROP TABLE IF EXISTS `parameter_file`;
CREATE TABLE `parameter_file` (
`ParameterFileID` int(10) unsigned NOT NULL auto_increment,
`FileID` int(10) unsigned NOT NULL default '0',
`ParameterTypeID` int(10) unsigned NOT NULL default '0',
`Value` text,
`InsertTime` int(10) unsigned NOT NULL default '0',
PRIMARY KEY (`ParameterFileID`),
UNIQUE KEY `file_type_uniq` (`FileID`,`ParameterTypeID`),
KEY `parameter_value` (`ParameterTypeID`,`Value`(64)),
CONSTRAINT `FK_parameter_file_2` FOREIGN KEY (`ParameterTypeID`) REFERENCES `parameter_type` (`ParameterTypeID`),
CONSTRAINT `FK_parameter_file_1` FOREIGN KEY (`FileID`) REFERENCES `files` (`FileID`)
) ENGINE=InnoDB DEFAULT CHARSET=utf8;
--
-- Dumping data for table `parameter_file`
--
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--
-- Table structure for table `parameter_session`
--
DROP TABLE IF EXISTS `parameter_session`;
CREATE TABLE `parameter_session` (
`ParameterSessionID` int(10) unsigned NOT NULL auto_increment,
`SessionID` int(10) unsigned NOT NULL default '0',
`ParameterTypeID` int(10) unsigned NOT NULL default '0',
`Value` varchar(255) default NULL,
`InsertTime` int(10) unsigned NOT NULL default '0',
PRIMARY KEY (`ParameterSessionID`),
KEY `session_type` (`SessionID`,`ParameterTypeID`),
KEY `parameter_value` (`ParameterTypeID`,`Value`(64)),
CONSTRAINT `FK_parameter_session_2` FOREIGN KEY (`ParameterTypeID`) REFERENCES `parameter_type` (`ParameterTypeID`),
CONSTRAINT `FK_parameter_session_1` FOREIGN KEY (`SessionID`) REFERENCES `session` (`ID`)
) ENGINE=InnoDB DEFAULT CHARSET=utf8;
--
-- Dumping data for table `parameter_session`
--
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--
-- Table structure for table `parameter_type`
--
DROP TABLE IF EXISTS `parameter_type`;
CREATE TABLE `parameter_type` (
`ParameterTypeID` int(10) unsigned NOT NULL auto_increment,
`Name` varchar(255) NOT NULL default '',
`Type` text,
`Description` text,
`RangeMin` double default NULL,
`RangeMax` double default NULL,
`SourceField` text,
`SourceFrom` text,
`SourceCondition` text,
`CurrentGUITable` varchar(255) default NULL,
`Queryable` tinyint(1) default '1',
`IsFile` tinyint(1) default '0',
PRIMARY KEY (`ParameterTypeID`),
KEY `name` (`Name`)
) ENGINE=InnoDB AUTO_INCREMENT=8 DEFAULT CHARSET=utf8 COMMENT='dictionary of all the variables in the project';
--
-- Dumping data for table `parameter_type`
--
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/*!40000 ALTER TABLE `parameter_type` DISABLE KEYS */;
INSERT INTO `parameter_type` VALUES
(2,'Geometric_distortion','text',NULL,NULL,NULL,NULL,'parameter_file',NULL,NULL,0,0),
(3,'Intensity_artifact','text',NULL,NULL,NULL,NULL,'parameter_file',NULL,NULL,0,0),
(4,'Movement_artifacts_within_scan','text',NULL,NULL,NULL,NULL,'parameter_file',NULL,NULL,0,0),
(5,'Movement_artifacts_between_packets','text',NULL,NULL,NULL,NULL,'parameter_file',NULL,NULL,0,0),
(6,'Coverage','text',NULL,NULL,NULL,NULL,'parameter_file',NULL,NULL,0,0),
(7,'md5hash','varchar(255)','md5hash magically created by NeuroDB::File',NULL,NULL,'parameter_file.Value','parameter_file',NULL,'quat_table_1',1,0),
(8,'Color_Artifact','text',NULL,NULL,NULL,NULL,'parameter_file',NULL,NULL,0,0),
(9,'Entropy','text',NULL,NULL,NULL,NULL,'parameter_file',NULL,NULL,0,0);
/*!40000 ALTER TABLE `parameter_type` ENABLE KEYS */;
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--
-- Table structure for table `parameter_type_category`
--
DROP TABLE IF EXISTS `parameter_type_category`;
CREATE TABLE `parameter_type_category` (
`ParameterTypeCategoryID` int(10) unsigned NOT NULL auto_increment,
`Name` varchar(255) default NULL,
`Type` enum('Metavars','Instrument') default 'Metavars',
PRIMARY KEY (`ParameterTypeCategoryID`)
) ENGINE=InnoDB AUTO_INCREMENT=2 DEFAULT CHARSET=utf8;
--
-- Dumping data for table `parameter_type_category`
--
LOCK TABLES `parameter_type_category` WRITE;
/*!40000 ALTER TABLE `parameter_type_category` DISABLE KEYS */;
INSERT INTO `parameter_type_category` VALUES (1,'MRI Variables','Metavars');
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--
-- Table structure for table `parameter_type_category_rel`
--
DROP TABLE IF EXISTS `parameter_type_category_rel`;
CREATE TABLE `parameter_type_category_rel` (
`ParameterTypeID` int(11) unsigned NOT NULL default '0',
`ParameterTypeCategoryID` int(11) unsigned NOT NULL default '0',
PRIMARY KEY (`ParameterTypeCategoryID`,`ParameterTypeID`),
KEY `FK_parameter_type_category_rel_1` (`ParameterTypeID`),
CONSTRAINT `FK_parameter_type_category_rel_2` FOREIGN KEY (`ParameterTypeCategoryID`) REFERENCES `parameter_type_category` (`ParameterTypeCategoryID`),
CONSTRAINT `FK_parameter_type_category_rel_1` FOREIGN KEY (`ParameterTypeID`) REFERENCES `parameter_type` (`ParameterTypeID`)
) ENGINE=InnoDB DEFAULT CHARSET=utf8;
--
-- Dumping data for table `parameter_type_category_rel`
--
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--
-- ADDing Meta-data Visit_label , candidate_label and candidate_dob
--
INSERT INTO parameter_type (Name, Type, Description, RangeMin, RangeMax, SourceField, SourceFrom, CurrentGUITable, Queryable, SourceCondition)
VALUES ('candidate_label','text','Identifier_of_candidate',null,null,'PSCID','candidate',null,1,null);
INSERT INTO parameter_type (Name, Type, Description, RangeMin, RangeMax, SourceField, SourceFrom, CurrentGUITable, Queryable, SourceCondition)
VALUES ('Visit_label','varchar(255)','Visit_label',null,null,'visit_label','session',null,1,null);
INSERT INTO parameter_type (Name, Type, Description, RangeMin, RangeMax, SourceField, SourceFrom, CurrentGUITable, Queryable, SourceCondition)
VALUES ('candidate_dob','date','Candidate_Dob',null,null,'DoB','candidate',null,1,null);
INSERT INTO parameter_type_category (Name, type) VALUES('Identifiers', 'Metavars');
INSERT INTO parameter_type_category_rel (ParameterTypeID,ParameterTypeCategoryID)
SELECT pt.ParameterTypeID,ptc.ParameterTypeCategoryID
FROM parameter_type pt,parameter_type_category ptc
WHERE ptc.Name='Identifiers' AND pt.Name IN ('candidate_label', 'Visit_label','candidate_dob');
--
-- Table structure for table `psc`
--