temporary fix for bigdup normalisation

adamewing · Nov 19, 2018 · c288a01 · c288a01
1 parent 5199d6d
commit c288a01
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Showing 2 changed files with 3 additions and 2 deletions.
diff --git a/.travis.yml b/.travis.yml
@@ -25,7 +25,7 @@ install:
     - cd exonerate
     - git checkout v2.4.0
     - autoreconf -i
-    - ./configure --prefix=$WORKDIR && make && make check && make install
+    - ./configure --prefix=$WORKDIR && make && make install
     - cd ..
 
     # Velvet

diff --git a/bin/addsv.py b/bin/addsv.py
@@ -394,7 +394,8 @@ def add_donor_reads(args, mutid, tmpbamfn, bdup_chrom, bdup_left_bnd, bdup_right
     for read in tmpbam.fetch(until_eof=True):
         outbam.write(read)
 
-    donor_norm_factor = min(cover_tmp,cover_donor)/max(cover_tmp,cover_donor)
+    #donor_norm_factor = min(cover_tmp,cover_donor)/max(cover_tmp,cover_donor)
+    donor_norm_factor = 1.0 # FIXME 
 
     logger.info('%s: BIGDUP donor coverage normalisation factor: %f' % (mutid, donor_norm_factor))