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* General SCENIC questions s-aibar

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No repressing modules after running pySCENIC

Denebium asked Jan 9, 2024 in * General SCENIC questions · Answered

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Running SCENIC by Cluster (Two Conditions)

MujeebQadiri asked Mar 25, 2024 in * General SCENIC questions · Unanswered

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Celltype and condition specific GRNs

ctspencer asked Apr 8, 2024 in * General SCENIC questions · Unanswered

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Can't get resource in notebooks/pySCENIC - Integration with scanpy.ipynb

execbbbr asked Nov 23, 2023 in [Python] · Unanswered

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Problem running pyscenic through sbatch

GeoKont asked Feb 22, 2024 in [Python] · Unanswered

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How to use SCENIC when comparing dataset representing two conditions?

singcell asked May 8, 2020 in * General SCENIC questions · Unanswered

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Compatibility with scVI corrected data

jesswhitts asked Oct 6, 2023 in * General SCENIC questions · Unanswered

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Why are the results of AUCell not centered around 0.5 (for a random "regulon")?

scyrusm asked Jan 22, 2024 in * General SCENIC questions · Unanswered

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What is the function of "top10perTarget" or "top50perTarget" in runSCENIC_2_createRegulons?

smilesw asked Jun 4, 2021 in * General SCENIC questions · Unanswered

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Is there a way to increase gene number included in a regulon?

parkjooyoung99 asked Jan 4, 2024 in * General SCENIC questions · Unanswered

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Multi-runs SCENIC - just multiple run of SCENIC? or are there other steps?

parkjooyoung99 asked Dec 27, 2023 in [VSN] · Unanswered

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Extracting Target Genes from Scenic's Reference Databases for Transcription Factors

fadichoucha asked Dec 7, 2023 in * General SCENIC questions · Unanswered

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runSCENIC_3_scoreCells error

alisyedraza1 asked Nov 16, 2023 in [R] · Unanswered

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How to merge two or more auc.loom

Jingle0814 asked Nov 9, 2023 in [R] · Unanswered

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How to run pyscenic by cell type and combine the results to visualize

Jingle0814 asked Nov 9, 2023 in * General SCENIC questions · Unanswered

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Transcription Factor to Regulon

yuw444 asked Oct 12, 2023 in * General SCENIC questions · Unanswered

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Getting regulon output table

bvaldebenitom asked Apr 4, 2023 in [Python] · Unanswered

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Number of cells and different results

lukais-iohan asked Oct 2, 2023 in [Python] · Unanswered

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grnboost2 scaling

tfrudakis asked Sep 26, 2023 in * General SCENIC questions · Unanswered

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Full SCENIC Pipeline for chicken

austinkunch asked Sep 16, 2023 in * General SCENIC questions · Unanswered

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Can I only keep genes that are TFs or in the feather file?

xinghansun asked Sep 13, 2023 in * General SCENIC questions · Unanswered

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Some targets contain their TF of the regulon.

xinghansun asked Sep 11, 2023 in [Python] · Unanswered

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Loom File Upload to Scope

Su870 asked Feb 8, 2023 in * General SCENIC questions · Unanswered

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Missing 5kb TSS files for human in cistargets resources database

pcm32 asked Jul 19, 2023 in * General SCENIC questions · Answered

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Does the same count matrix with different cellinfo generates different result?

parkjooyoung99 asked Aug 26, 2023 in * General SCENIC questions · Closed · Unanswered

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