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SimulationExperiment view: export all graph panels, even if they don'…
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…t contain graphs (opencor#1426).
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@agarny
agarny committed Nov 10, 2017
1 parent ac428fa commit b7e12d3
Showing 1 changed file with 98 additions and 101 deletions.
199 changes: 98 additions & 101 deletions ...gins/simulation/SimulationExperimentView/src/simulationexperimentviewsimulationwidget.cpp
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Expand Up @@ -1671,122 +1671,119 @@ bool SimulationExperimentViewSimulationWidget::createSedmlFile(const QString &pF
sedmlOneStep, simulationNumber);
}

// Retrieve all the graphs that are to be plotted, if any
// Create a 2D plot output for each graph panel that we have, and retrieve
// all the graphs, if any, that are to be plotted on them

QList<Core::Properties> graphsList = QList<Core::Properties>();
QList<Core::Properties> logAxisXGraphs = QList<Core::Properties>();
QList<Core::Properties> logAxisYGraphs = QList<Core::Properties>();
QMap<Core::Properties, libsedml::SedPlot2D *> graphsSedmlPlot2ds = QMap<Core::Properties, libsedml::SedPlot2D *>();
QMap<Core::Properties, int> graphsGraphPanelCounters = QMap<Core::Properties, int>();
SimulationExperimentViewInformationGraphPanelAndGraphsWidget *graphPanelAndGraphsWidget = mContentsWidget->informationWidget()->graphPanelAndGraphsWidget();
int graphPlotCounter = 0;

foreach (GraphPanelWidget::GraphPanelWidget *graphPanel,
mContentsWidget->graphPanelsWidget()->graphPanels()) {
// Create and customise the look and feel of our 2D plot

libsedml::SedPlot2D *sedmlPlot2d = sedmlDocument->createPlot2D();

sedmlPlot2d->setId(QString("plot%1").arg(++graphPlotCounter).toStdString());

// Keep track of the graph panel's graphs, if any

Core::Properties graphs = graphPanelAndGraphsWidget->graphProperties(graphPanel, mFileName);

if (!graphs.isEmpty())
if (!graphs.isEmpty()) {
graphsList << graphs;

if (graphPanel->plot()->logAxisX())
logAxisXGraphs << graphs;

if (graphPanel->plot()->logAxisY())
logAxisYGraphs << graphs;
graphsSedmlPlot2ds.insert(graphs, sedmlPlot2d);
graphsGraphPanelCounters.insert(graphs, graphPlotCounter);
}
}

// Create and customise 2D plot outputs and data generators for all the
// graphs that are to be plotted, if any

if (!graphsList.isEmpty()) {
int graphPlotCounter = 0;

foreach (Core::Properties graphs, graphsList) {
++graphPlotCounter;

int graphCounter = 0;
libsedml::SedPlot2D *sedmlPlot2d = sedmlDocument->createPlot2D();

sedmlPlot2d->setId(QString("plot%1").arg(graphPlotCounter).toStdString());

bool logX = logAxisXGraphs.contains(graphs);
bool logY = logAxisYGraphs.contains(graphs);

foreach (Core::Property *property, graphs) {
++graphCounter;

// Create two data generators for the X and Y parameters of
// our current graph

libsedml::SedDataGenerator *sedmlDataGeneratorX = sedmlDocument->createDataGenerator();
libsedml::SedDataGenerator *sedmlDataGeneratorY = sedmlDocument->createDataGenerator();
std::string sedmlDataGeneratorIdX = QString("xDataGenerator%1_%2").arg(QString::number(graphPlotCounter),
QString::number(graphCounter)).toStdString();
std::string sedmlDataGeneratorIdY = QString("yDataGenerator%1_%2").arg(QString::number(graphPlotCounter),
QString::number(graphCounter)).toStdString();

sedmlDataGeneratorX->setId(sedmlDataGeneratorIdX);
sedmlDataGeneratorY->setId(sedmlDataGeneratorIdY);

libsedml::SedVariable *sedmlVariableX = sedmlDataGeneratorX->createVariable();
libsedml::SedVariable *sedmlVariableY = sedmlDataGeneratorY->createVariable();
QStringList propertyX = property->properties()[1]->value().split('.');
QStringList propertyY = property->properties()[2]->value().split('.');

sedmlVariableX->setId(QString("xVariable%1_%2").arg(QString::number(graphPlotCounter),
QString::number(graphCounter)).toStdString());
sedmlVariableX->setTaskReference(sedmlRepeatedTask->getId());
addSedmlVariableTarget(sedmlVariableX, propertyX[propertyX.count()-2], propertyX.last());

sedmlVariableY->setId(QString("yVariable%1_%2").arg(QString::number(graphPlotCounter),
QString::number(graphCounter)).toStdString());
sedmlVariableY->setTaskReference(sedmlRepeatedTask->getId());
addSedmlVariableTarget(sedmlVariableY, propertyY[propertyY.count()-2], propertyY.last());

sedmlDataGeneratorX->setMath(SBML_parseFormula(sedmlVariableX->getId().c_str()));
sedmlDataGeneratorY->setMath(SBML_parseFormula(sedmlVariableY->getId().c_str()));

// Create a curve for our current graph

libsedml::SedCurve *sedmlCurve = sedmlPlot2d->createCurve();

sedmlCurve->setId(QString("curve%1_%2").arg(QString::number(graphPlotCounter),
QString::number(graphCounter)).toStdString());

sedmlCurve->setXDataReference(sedmlDataGeneratorIdX);
sedmlCurve->setLogX(logX);

sedmlCurve->setYDataReference(sedmlDataGeneratorIdY);
sedmlCurve->setLogY(logY);

// Customise our curve using an annotation

static const QString CurveProperty = QString("<%1>%2</%1>");

Core::Properties lineProperties = property->properties()[3]->properties();
Core::Properties symbolProperties = property->properties()[4]->properties();

sedmlCurve->appendAnnotation(QString("<%1 xmlns=\"%2\">"
" <%3>%5</%3>"
" <%4>%6</%4>"
"</%1>").arg( SEDMLSupport::CurveProperties,
SEDMLSupport::OpencorNamespace,
SEDMLSupport::LineProperties,
SEDMLSupport::SymbolProperties,
CurveProperty.arg(SEDMLSupport::LineStyle,
SEDMLSupport::lineStyleValue(lineProperties[0]->listValueIndex()))
+CurveProperty.arg(SEDMLSupport::LineWidth,
stringValue(lineProperties[1]))
+CurveProperty.arg(SEDMLSupport::LineColor,
stringValue(lineProperties[2])),
CurveProperty.arg(SEDMLSupport::SymbolStyle,
SEDMLSupport::symbolStyleValue(symbolProperties[0]->listValueIndex()))
+CurveProperty.arg(SEDMLSupport::SymbolSize,
stringValue(symbolProperties[1]))
+CurveProperty.arg(SEDMLSupport::SymbolColor,
stringValue(symbolProperties[2]))
+CurveProperty.arg(SEDMLSupport::SymbolFilled,
stringValue(symbolProperties[3]))
+CurveProperty.arg(SEDMLSupport::SymbolFillColor,
stringValue(symbolProperties[4]))).toStdString());
}
foreach (const Core::Properties &graphs, graphsList) {
// Create some graphs

libsedml::SedPlot2D *sedmlPlot2d = graphsSedmlPlot2ds.value(graphs);
int graphPlotCounter = graphsGraphPanelCounters.value(graphs);
int graphCounter = 0;

foreach (Core::Property *property, graphs) {
++graphCounter;

// Create two data generators for the X and Y parameters of our
// current graph

libsedml::SedDataGenerator *sedmlDataGeneratorX = sedmlDocument->createDataGenerator();
libsedml::SedDataGenerator *sedmlDataGeneratorY = sedmlDocument->createDataGenerator();
std::string sedmlDataGeneratorIdX = QString("xDataGenerator%1_%2").arg(QString::number(graphPlotCounter),
QString::number(graphCounter)).toStdString();
std::string sedmlDataGeneratorIdY = QString("yDataGenerator%1_%2").arg(QString::number(graphPlotCounter),
QString::number(graphCounter)).toStdString();

sedmlDataGeneratorX->setId(sedmlDataGeneratorIdX);
sedmlDataGeneratorY->setId(sedmlDataGeneratorIdY);

libsedml::SedVariable *sedmlVariableX = sedmlDataGeneratorX->createVariable();
libsedml::SedVariable *sedmlVariableY = sedmlDataGeneratorY->createVariable();
QStringList propertyX = property->properties()[1]->value().split('.');
QStringList propertyY = property->properties()[2]->value().split('.');

sedmlVariableX->setId(QString("xVariable%1_%2").arg(QString::number(graphPlotCounter),
QString::number(graphCounter)).toStdString());
sedmlVariableX->setTaskReference(sedmlRepeatedTask->getId());
addSedmlVariableTarget(sedmlVariableX, propertyX[propertyX.count()-2], propertyX.last());

sedmlVariableY->setId(QString("yVariable%1_%2").arg(QString::number(graphPlotCounter),
QString::number(graphCounter)).toStdString());
sedmlVariableY->setTaskReference(sedmlRepeatedTask->getId());
addSedmlVariableTarget(sedmlVariableY, propertyY[propertyY.count()-2], propertyY.last());

sedmlDataGeneratorX->setMath(SBML_parseFormula(sedmlVariableX->getId().c_str()));
sedmlDataGeneratorY->setMath(SBML_parseFormula(sedmlVariableY->getId().c_str()));

// Create a curve for our current graph

libsedml::SedCurve *sedmlCurve = sedmlPlot2d->createCurve();

sedmlCurve->setId(QString("curve%1_%2").arg(QString::number(graphPlotCounter),
QString::number(graphCounter)).toStdString());

sedmlCurve->setXDataReference(sedmlDataGeneratorIdX);
sedmlCurve->setYDataReference(sedmlDataGeneratorIdY);

// Customise our curve using an annotation

static const QString CurveProperty = QString("<%1>%2</%1>");

Core::Properties lineProperties = property->properties()[3]->properties();
Core::Properties symbolProperties = property->properties()[4]->properties();

sedmlCurve->appendAnnotation(QString("<%1 xmlns=\"%2\">"
" <%3>%5</%3>"
" <%4>%6</%4>"
"</%1>").arg( SEDMLSupport::CurveProperties,
SEDMLSupport::OpencorNamespace,
SEDMLSupport::LineProperties,
SEDMLSupport::SymbolProperties,
CurveProperty.arg(SEDMLSupport::LineStyle,
SEDMLSupport::lineStyleValue(lineProperties[0]->listValueIndex()))
+CurveProperty.arg(SEDMLSupport::LineWidth,
stringValue(lineProperties[1]))
+CurveProperty.arg(SEDMLSupport::LineColor,
stringValue(lineProperties[2])),
CurveProperty.arg(SEDMLSupport::SymbolStyle,
SEDMLSupport::symbolStyleValue(symbolProperties[0]->listValueIndex()))
+CurveProperty.arg(SEDMLSupport::SymbolSize,
stringValue(symbolProperties[1]))
+CurveProperty.arg(SEDMLSupport::SymbolColor,
stringValue(symbolProperties[2]))
+CurveProperty.arg(SEDMLSupport::SymbolFilled,
stringValue(symbolProperties[3]))
+CurveProperty.arg(SEDMLSupport::SymbolFillColor,
stringValue(symbolProperties[4]))).toStdString());
}
}

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