Code to reproduce RNA-seq analysis contained in Morcos et al.,2021.

structure

• bin: code to reproduce the analysis
• docs: gene sets used to score hematopoietic lineages across single cells
• notebooks_html: html-rendered versions of code contained in bin/. Contains all figures generated for the paper
• renv.lock: lockfile to recreate R environment using Renv

Note: as reported here , knitting using Python chunks in reticulate is not always effective. To workaround the issue, you can move to the directory containing the notebooks and knit them using rmarkdown::render('<yourfavouritenotebook.Rmd>')