2022-Q3-Release plan

[syphax-bouazzouni]

This issue is a description of the main contributions and changes brought by the 2022 Release, it has for purpose to list and fellow the developments and progression of the features through this cycle.

Timeline

• Started: September 2022
• Ends: December 2022

New features

• Ontology viewer migrate from Jquery to Hotwire #303
• Mapping UI refactor #299
• Enhance the portal to support SKOS #262
• update ontology edit/new view ui ontoportal-lirmm/bioportal_web_ui#67
• Update how the ontology-level attributes are extracted at the process time #293
• Extract ontology mappings (excatMatch,...) #302
• Merge to upstream all the components (12/2022) #291

Content fixes

• CO pull location update each day #167
• 0ntologies diagnostics (January 2022) #192

Bug fixes

• Submission update doest not redirect to ontology page ontoportal-lirmm/bioportal_web_ui#134
• ontology update page does not redirect to ontology page ontoportal-lirmm/bioportal_web_ui#97
• See the state of our tests #237
• Server down error (4store) ontoportal-lirmm/bioportal_web_ui#8
• mapping show details not showing process details ontoportal-lirmm/ontologies_api#19
• Agroportal concept/class request time load optimization ontoportal-lirmm/bioportal_web_ui#109
• Fix language filter for data other than text ontoportal-lirmm/goo#13
• Fix generated oder by sparql query ontoportal-lirmm/goo#12
• fix mappings tests #306

Devops

• Implement a development environment for each projects #144
• A docker development environment for the UI  ontoportal-lirmm/bioportal_web_ui#110
• update ruby version of the servers to 2.7.5 #277
• update node version of the servers to >= 12 #278
• out memory killed tomcat and 4s-httpd #288

Documentation

• AgroPortal documentation consolidation and new documentation #162
• Feature: Migrate the docs to the just-the-docs template ontoportal/documentation#4

Linked pull requests (Our contributions to the ontoportal project)

• Refactor: The first brick of an harmonized way to get request params ncbo/ontologies_api#109
• Feature: Extract ontology internal mappings ncbo/ontologies_linked_data#166
• Fix: Some skipped tests ncbo/goo#130
• Feature: Add infinite scroll container view component ncbo/bioportal_web_ui#235
• Feature: Add docker environment for the UI  ncbo/bioportal_web_ui#229
• Feautre: Add multiple media types models ncbo/ontologies_api_ruby_client#17
• Feature: Get the correct type for skos concepts ncbo/ontologies_linked_data#162
• Feature: Not found message by context  ncbo/bioportal_web_ui#228
• Feature: Add the possibility to add a request id ncbo/ontologies_api_ruby_client#15
• Feature: add the attributes dcterms:created and dcterms:modified to classes model  ncbo/ontologies_linked_data#161
• Feature: Add mapping update endpoint ncbo/ontologies_api#103
• Refactor: Split mappings_ontologies method to small functions ncbo/ontologies_linked_data#159
• Fix: Add bring_remaining to process in get_rest_mapping ncbo/ontologies_linked_data#158
• Feature: Add modal view component ncbo/bioportal_web_ui#225
• Feature: add view components gem ncbo/bioportal_web_ui#224
• Refactor: Update ontology viewer from old JS to Turbo + Stimulus  ncbo/bioportal_web_ui#223
• Refactor: mapping creation and mappings tests ncbo/ontologies_api#102
• Feature: add mapping bulk load endpoint "/mappings/load" ncbo/ontologies_api#101
• Refactor: Update rails to version 7.0 ncbo/bioportal_web_ui#201
• Feature: Append new submission data by chunks to the triple store ncbo/goo#122
• Refactor: Optimize the generated SPARQL queries ncbo/goo#124
• Add optional unions with bind query clause ncbo/sparql-client#7
• Feature: extract ontology URI automatically in submissions process ncbo/ontologies_linked_data#153
• Feature: add a bulk loader for rest mapping / SSSOM integration  ncbo/ontologies_linked_data#154
• Add a script to pull a new version of an ontology on demand ncbo/ncbo_cron#59
• Refactor: extract replace rest_url_prefix to id_url_prefix and and vice versa methods ncbo/ontologies_linked_data#155
• Fix: bug in the get_rest_mapping method ncbo/ontologies_linked_data#156
• Small code refactor to reuse replace url prefix ncbo/ontologies_api#100
• Fix: Return http delete, batch and patch responses ncbo/ontologies_api_ruby_client#13
• Refactor: Centralise escaping and unescaping urls / URI.escape obsolete warning on Ruby 2.7+ ncbo/bioportal_web_ui#217
• Update linear gradient outdated syntax ncbo/bioportal_web_ui#218
• Refactor: Centralize mapping creation ncbo/ontologies_linked_data#157

[syphax-bouazzouni]

Related release https://github.com/ontoportal-lirmm/bioportal_web_ui/releases/tag/v2.4.0