COVID19 School Dynamics

Project name is a work in progress!

Getting started

"Installation"

These steps prevent polluting and breaking packages on your machine.

1. Move the enclosing folder, COVID19SchoolReopening, to a convenient location.

2. Start Julia.

3. Type ]activate . to switch to the environment for this project. If this was successful Julia prompt should now read (COVID19SchoolReopening) pkg>.

4. Type ]instantiate to reproduce the environment defined in Manifest.toml.

Now the package code and examples will work whenever the COVID19SchoolReopening environment is active.

Using the code

In a REPL:

1. Start julia

2. Type ]activate .

3. The usual using COVID19SchoolReopening will work.

In a Jupyter Notebook:

1. Set the working directory to the enclosing folder, e.g. path/to/COVID19SchoolReopening using cd in the command line or cd() in Julia.

2. Start the notebook server as usual.

The notebooks in this project should just work using this method. The following workflow should guarantee that everything works:

using IJulia

# assuming you're currently in the folder COVID19SchoolReopening
notebook(detached=true, dir=".")

# otherwise
notebook(detached=true, dir="path/to/COVID19SchoolReopening")

File structure

• src: Contains code used to generate ODE models.
• experiments: Notes with Julia code I used to play around with the models. Everything in here, including the notebooks, is generated from the *.jmd files using Weave.