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galaxy-PROV
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README.md

galaxy-PROV Build Status

Synopsis

galaxy-PROV is a tool dedicated to the generation of provenance graphs (RDF, PROV-O ontology) based on Galaxy user histories. The tool is currently available through a command line interface. A web-based user interface is under active development.

Motivations

The Galaxy workflow environment has become very popular in the bioinformatics community. However for now, it is not possible to export provenance metadata through a standard schema and format. To address this issue and to allow the combination of multiple workflow execution traces from PROV-enabled workflow engines, we developed a loosely coupled tool aimed at exporting Galaxy user histories into PROV RDF data.

Code Example

Quick start

Contributors

License

MIT License

Copyright (c) 2017 albangaignard

Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions:

The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.

THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.

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