Skip to content

2.5.2a
Compare
Choose a tag to compare
@alexdobin alexdobin released this 10 May 21:44
· 883 commits to master since this release
2.5.2a
41b5d74
  • Fixed the "GstrandBit" problem.
  • Fixed a bug introduced in 2.5.1a that caused problems with single-end alignments output in some cases.
  • Fixed a bug that can cause STARlong seg-faults in rare cases.
  • Fixed a bug that caused output of unmapped mates for single end alignments even with --outSAMunmapped None .
  • Implemented --winReadCoverageRelativeMin and --winReadCoverageBasesMin to control coverage of the alignment windows for STARlong.
  • Implemented --outSAMfilter KeepAllAddedReferences option which will keep all alignments to the added references.
  • Implemented --alignEndsProtrude option to control output of alignments with protruding ends.
  • Implemented --outTmpKeep All option to keep the temporary files.
  • Implemented --alignEndsType Extend5pOfReads12 option for full extension of 5' ends of both mates.
Assets 2
Loading