fix pytest warnings and install necessary plugins

[siyuan0322]

• Install pytest-timeout plugin
• Fix a numpy warning
• Fix a pandas warning:
  • /home/runner/.local/lib/python3.8/site-packages/graphscope/tests/conftest.py:611: FutureWarning: The prefix argument has been deprecated and will be removed in a future version. Use a list comprehension on the column names in the future.

GraphDAGNode doesn't need unload self from engine, cause it's never load itself.
Instead, Graph will take care of the unload, and it has already.
Fixes #2349

[codecov-commenter]

Codecov Report

Merging #2338 (07b4819) into main (4485e49) will decrease coverage by 0.79%.
The diff coverage is n/a.

Additional details and impacted files

@@            Coverage Diff             @@
##             main    #2338      +/-   ##
==========================================
- Coverage   73.10%   72.30%   -0.80%     
==========================================
  Files          88       88              
  Lines        9719     9711       -8     
==========================================
- Hits         7105     7022      -83     
- Misses       2614     2689      +75     

Impacted Files	Coverage Δ
python/graphscope/framework/utils.py	67.25% <ø> (-1.63%)	⬇️
python/graphscope/tests/unittest/test_java_app.py	52.38% <0.00%> (-47.62%)	⬇️
python/graphscope/analytical/app/java_app.py	24.36% <0.00%> (-4.57%)	⬇️
python/graphscope/client/rpc.py	81.34% <0.00%> (-2.99%)	⬇️
python/graphscope/framework/graph_utils.py	80.15% <0.00%> (-2.39%)	⬇️
python/graphscope/client/session.py	75.37% <0.00%> (-1.51%)	⬇️
python/graphscope/framework/app.py	90.32% <0.00%> (-1.39%)	⬇️
python/graphscope/framework/graph_schema.py	64.61% <0.00%> (-0.23%)	⬇️

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