[MRG+2] Fix conda deployments #300

aaronreidsmith · 2020-02-17T21:15:39Z

Description

We ran into a bunch of issues when deploying 1.5.3. The only one that is still affecting us is that our conda builds are broken. A normal conda build should have both an info directory and a lib directory (Lib on Windows). Here is a version of pmdarima on conda that we did not create:

$ tar -tf pmdarima-1.2.0-py36h56e435c_7.tar.bz2 
info/hash_input.json
info/index.json
info/git
info/has_prefix
info/about.json
info/files
info/paths.json
lib/python3.6/site-packages/pmdarima/preprocessing/exog/tests/__init__.py
info/test/run_test.py
lib/python3.6/site-packages/pmdarima/__check_build/tests/__init__.py
lib/python3.6/site-packages/pmdarima/datasets/tests/__init__.py
lib/python3.6/site-packages/pmdarima/_build_utils/tests/__init__.py
lib/python3.6/site-packages/pmdarima/preprocessing/endog/__init__.py
lib/python3.6/site-packages/pmdarima/preprocessing/exog/__init__.py
lib/python3.6/site-packages/pmdarima/preprocessing/__init__.py
lib/python3.6/site-packages/pmdarima/datasets/__init__.py
lib/python3.6/site-packages/pmdarima/arima/tests/test_c_arima.py
lib/python3.6/site-packages/pmdarima/compat/pandas.py
lib/python3.6/site-packages/pmdarima/compat/__init__.py
lib/python3.6/site-packages/pmdarima/__check_build/tests/test_check_build.py
lib/python3.6/site-packages/pmdarima/arima/__init__.py
lib/python3.6/site-packages/pmdarima/compat/_internal.py
lib/python3.6/site-packages/pmdarima/arima/warnings.py
lib/python3.6/site-packages/pmdarima/compat/numpy.py
lib/python3.6/site-packages/pmdarima/__check_build/setup.py
lib/python3.6/site-packages/pmdarima/utils/tests/test_wrapped.py
lib/python3.6/site-packages/pmdarima/datasets/tests/test_load_datasets.py
lib/python3.6/site-packages/pmdarima/utils/tests/test_meta.py
lib/python3.6/site-packages/pmdarima/compat/tests/test_python.py
lib/python3.6/site-packages/pmdarima/preprocessing/setup.py
lib/python3.6/site-packages/pmdarima/compat/tests/test_statsmodels.py
lib/python3.6/site-packages/pmdarima/utils/__init__.py
lib/python3.6/site-packages/pmdarima/compat/statsmodels.py
lib/python3.6/site-packages/pmdarima/compat/python.py
lib/python3.6/site-packages/pmdarima/preprocessing/exog/setup.py
lib/python3.6/site-packages/pmdarima/arima/tests/test_arima_diagnostics.py
lib/python3.6/site-packages/pmdarima/decorators.py
lib/python3.6/site-packages/pmdarima/arima/setup.py
lib/python3.6/site-packages/pmdarima/preprocessing/endog/base.py
lib/python3.6/site-packages/pmdarima/setup.py
lib/python3.6/site-packages/pmdarima/compat/matplotlib.py
lib/python3.6/site-packages/pmdarima/utils/wrapped.py
lib/python3.6/site-packages/pmdarima/utils/tests/test_vis.py
lib/python3.6/site-packages/pmdarima/__check_build/__init__.py
lib/python3.6/site-packages/pmdarima/__init__.py
lib/python3.6/site-packages/pmdarima/preprocessing/exog/base.py
lib/python3.6/site-packages/pmdarima/utils/tests/test_array.py
lib/python3.6/site-packages/pmdarima/base.py
lib/python3.6/site-packages/pmdarima/preprocessing/endog/tests/test_boxcox.py
lib/python3.6/site-packages/pmdarima/arima/tests/test_approx.py
lib/python3.6/site-packages/pmdarima/_build_utils/__init__.py
lib/python3.6/site-packages/pmdarima/datasets/airpassengers.py
lib/python3.6/site-packages/pmdarima/datasets/austres.py
lib/python3.6/site-packages/pmdarima/datasets/lynx.py
lib/python3.6/site-packages/pmdarima/utils/metaestimators.py
lib/python3.6/site-packages/pmdarima/datasets/woolyrnq.py
lib/python3.6/site-packages/pmdarima/preprocessing/exog/tests/test_fourier.py
lib/python3.6/site-packages/pmdarima/datasets/heartrate.py
lib/python3.6/site-packages/pmdarima/preprocessing/base.py
lib/python3.6/site-packages/pmdarima/datasets/wineind.py
lib/python3.6/site-packages/pmdarima/arima/utils.py
lib/python3.6/site-packages/pmdarima/preprocessing/endog/boxcox.py
lib/python3.6/site-packages/pmdarima/arima/approx.py
lib/python3.6/site-packages/pmdarima/arima/tests/test_stationarity.py
lib/python3.6/site-packages/pmdarima/preprocessing/exog/fourier.py
lib/python3.6/site-packages/pmdarima/utils/array.py
lib/python3.6/site-packages/pmdarima/utils/visualization.py
lib/python3.6/site-packages/pmdarima/arima/_auto_solvers.py
lib/python3.6/site-packages/pmdarima/arima/tests/test_seasonality.py
lib/python3.6/site-packages/pmdarima/pipeline.py
lib/python3.6/site-packages/pmdarima/arima/_doc.py
lib/python3.6/site-packages/pmdarima/arima/seasonality.py
lib/python3.6/site-packages/pmdarima/arima/stationarity.py
lib/python3.6/site-packages/pmdarima/arima/auto.py
lib/python3.6/site-packages/pmdarima/arima/tests/test_arima.py
lib/python3.6/site-packages/pmdarima/arima/arima.py
lib/python3.6/site-packages/pmdarima/preprocessing/endog/tests/__init__.py
lib/python3.6/site-packages/pmdarima/utils/tests/__init__.py
lib/python3.6/site-packages/pmdarima/arima/tests/__init__.py
lib/python3.6/site-packages/pmdarima/compat/tests/__init__.py
lib/python3.6/site-packages/pmdarima-1.2.0.dist-info/AUTHORS.md
lib/python3.6/site-packages/pmdarima-1.2.0.dist-info/INSTALLER
lib/python3.6/site-packages/pmdarima-1.2.0.dist-info/WHEEL
lib/python3.6/site-packages/pmdarima-1.2.0.dist-info/LICENSE
lib/python3.6/site-packages/pmdarima-1.2.0.dist-info/METADATA
lib/python3.6/site-packages/pmdarima-1.2.0.dist-info/RECORD
lib/python3.6/site-packages/pmdarima-1.2.0.dist-info/top_level.txt
lib/python3.6/site-packages/pmdarima/utils/tests/__pycache__/__init__.cpython-37.pyc
lib/python3.6/site-packages/pmdarima/arima/tests/__pycache__/__init__.cpython-37.pyc
lib/python3.6/site-packages/pmdarima/compat/tests/__pycache__/__init__.cpython-37.pyc
lib/python3.6/site-packages/pmdarima/arima/tests/__pycache__/__init__.cpython-36.pyc
lib/python3.6/site-packages/pmdarima/utils/tests/__pycache__/__init__.cpython-36.pyc
lib/python3.6/site-packages/pmdarima/compat/tests/__pycache__/__init__.cpython-36.pyc
lib/python3.6/site-packages/pmdarima/preprocessing/exog/tests/__pycache__/__init__.cpython-37.pyc
lib/python3.6/site-packages/pmdarima/preprocessing/endog/tests/__pycache__/__init__.cpython-37.pyc
lib/python3.6/site-packages/pmdarima/preprocessing/exog/tests/__pycache__/__init__.cpython-36.pyc
lib/python3.6/site-packages/pmdarima/preprocessing/endog/tests/__pycache__/__init__.cpython-36.pyc
lib/python3.6/site-packages/pmdarima/datasets/tests/__pycache__/__init__.cpython-37.pyc
lib/python3.6/site-packages/pmdarima/_build_utils/tests/__pycache__/__init__.cpython-37.pyc
lib/python3.6/site-packages/pmdarima/__check_build/tests/__pycache__/__init__.cpython-37.pyc
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lib/python3.6/site-packages/pmdarima/preprocessing/exog/__pycache__/__init__.cpython-37.pyc
lib/python3.6/site-packages/pmdarima/preprocessing/endog/__pycache__/__init__.cpython-37.pyc
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lib/python3.6/site-packages/pmdarima/preprocessing/exog/__pycache__/__init__.cpython-36.pyc
lib/python3.6/site-packages/pmdarima/preprocessing/endog/__pycache__/__init__.cpython-36.pyc
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lib/python3.6/site-packages/pmdarima/datasets/__pycache__/__init__.cpython-37.pyc
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lib/python3.6/site-packages/pmdarima/compat/tests/__pycache__/test_python.cpython-37.pyc
lib/python3.6/site-packages/pmdarima/compat/tests/__pycache__/test_python.cpython-36.pyc
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lib/python3.6/site-packages/pmdarima/compat/__pycache__/statsmodels.cpython-36.pyc
lib/python3.6/site-packages/pmdarima/preprocessing/exog/__pycache__/setup.cpython-37.pyc
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lib/python3.6/site-packages/pmdarima/compat/tests/__pycache__/test_statsmodels.cpython-36.pyc
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lib/python3.6/site-packages/pmdarima/_build_utils/__pycache__/__init__.cpython-36.pyc
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lib/python3.6/site-packages/pmdarima/preprocessing/exog/__pycache__/base.cpython-36.pyc
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lib/python3.6/site-packages/pmdarima/preprocessing/endog/tests/__pycache__/test_boxcox.cpython-36.pyc
lib/python3.6/site-packages/pmdarima/__pycache__/base.cpython-37.pyc
lib/python3.6/site-packages/pmdarima/__pycache__/base.cpython-36.pyc
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lib/python3.6/site-packages/pmdarima/preprocessing/exog/tests/__pycache__/test_fourier.cpython-36.pyc
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lib/python3.6/site-packages/pmdarima/utils/__pycache__/metaestimators.cpython-36.pyc
lib/python3.6/site-packages/pmdarima/datasets/__pycache__/austres.cpython-37.pyc
lib/python3.6/site-packages/pmdarima/datasets/__pycache__/lynx.cpython-37.pyc
lib/python3.6/site-packages/pmdarima/datasets/__pycache__/austres.cpython-36.pyc
lib/python3.6/site-packages/pmdarima/datasets/__pycache__/lynx.cpython-36.pyc
lib/python3.6/site-packages/pmdarima/datasets/__pycache__/woolyrnq.cpython-37.pyc
lib/python3.6/site-packages/pmdarima/datasets/__pycache__/woolyrnq.cpython-36.pyc
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lib/python3.6/site-packages/pmdarima/arima/__pycache__/approx.cpython-36.pyc
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lib/python3.6/site-packages/pmdarima/arima/tests/__pycache__/test_arima.cpython-36.pyc
lib/python3.6/site-packages/pmdarima/arima/__pycache__/arima.cpython-37.pyc
lib/python3.6/site-packages/pmdarima/arima/__pycache__/arima.cpython-36.pyc
lib/python3.6/site-packages/pmdarima/__check_build/_check_build.cpython-36m-darwin.so
lib/python3.6/site-packages/pmdarima/preprocessing/exog/_fourier.cpython-36m-darwin.so
lib/python3.6/site-packages/pmdarima/arima/_arima.cpython-36m-darwin.so
info/recipe/conda_build_config.yaml
info/recipe/20190523.meta.yaml
info/recipe/someting_conda_build_config.yaml
info/recipe/20190525.1946.meta.yaml
info/recipe/meta.yaml
info/recipe/meta.yaml.template
info/recipe/build.sh.old
info/recipe/bld.bat.old

Here is one we created:

$ tar -tf pmdarima-1.5.3-py36.tar.bz2 
info/paths.json
info/hash_input.json
info/index.json
info/about.json
info/git
info/files
info/recipe/meta.yaml.template
info/test/run_test.sh
info/licenses/LICENSE
info/recipe/conda_build_config.yaml
info/recipe/meta.yaml

As you can see, ours only has the info directory.

Here is what is included/addressed in this PR:

Conda is silly in that when it builds, it installs to the default site-packages for testing, but then does not include that in the output...
- To address this, we install to both site-packages and $PREFIX/site-packages ($PREFIX is a conda env variable). One gets tested running our unit tests, the other is bundled in the output tar.bz2
Related to the above change, before deploying, we now check to make sure the output tar.bz2 has a lib (or Lib on Windows) directory before deploying (it is a requirement for deployment now)
Previous iterations of this conda pipeline had 3 separate files for our operating systems. We still have 3 files, but now we have common, for steps shared between all operating systems, unix for steps shared between Linux and macOS, and windows for Windows. This should save us time/energy when we have to update this pipeline.
We no longer build a wheel before building the conda distribution on Unix
Fix silent error where $output_file was not defined after moving to using a separate deploy script
Fixes our conda string to look something like this: py37gcd6b1ea6_68 instead of py37

Fixes #298

Type of change

Bug fix (non-breaking change which fixes an issue)

How Has This Been Tested?

Unit tests pass in conda
All conda dists now have lib directories

Checklist:

I have performed a self-review of my own code
I have commented my code, particularly in hard-to-understand areas
I have made corresponding changes to the documentation
My changes generate no new warnings
I have added tests that prove my fix is effective or that my feature works
New and existing unit tests pass locally with my changes

charlesdrotar

LGTM!

tgsmith61591

This is :big-brain-time:. How do we test?

aaronreidsmith · 2020-02-18T13:43:49Z

@tgsmith61591 We can use the rc tags? That will test the deployment without deploying to the production channels

TariqAHassan · 2020-03-08T23:13:11Z

Hey @aaronreidsmith

Was this fix ever pushed to the production channel?
conda install -c alkaline-ml pmdarima still does not work when using Python 3.7.

aaronreidsmith · 2020-03-08T23:57:26Z

Not quite yet, sorry for the delay! We have a couple more features/fixes before we deploy. Conda builds were new for all of the maintainers, and added in 1.5.3, so apologies for the hiccups. Use pip install pmdarima for now. You can watch for releases to be notified when we get it out

TariqAHassan · 2020-03-09T00:04:23Z

Thanks :)

aaronreidsmith · 2020-04-27T22:24:16Z

@TariqAHassan I hate to be the bearer of bad news on this, but v1.6.0 will actually not have conda support.

See issue #326 for details, but basically we have tried and failed several times to get this package to build properly on conda for the platforms we support on pypi. If you or anyone you know who uses the package happens to be a conda expert, help/PRs are welcome!

aaronreidsmith added 30 commits February 14, 2020 15:10

Use git url

6542e48

Change windows

1e68d97

Remove extra curly brace

9040f5b

Temp changes for local testing

7a0be70

Specify python version

b062293

Use curly braces...

3407392

Add root path back

aa99a58

Add string back

06ae23f

Add check step

d32b9b4

Activate env

2519b0a

Update string

476f874

Try double quotes

18c430e

Add echo

12ca1c6

Try adding ls to mac

3bdf928

Change gitignore

646c189

Try bld files?

7021c64

Try removing ignore installed

3b1fd2f

Use double quotes

09bdd8c

Update Conda

16036ba

Add yes flag

dcca62d

Add it on mac build too...

df67651

Try dollar python

e82cd68

Try dollar prefix

dccd5b4

Revert previous change

bcfbebf

Try setup.py

ef3f4dd

Remove preprocessing on mac

cf52a44

Try setting INLCUDE and LIBRARY paths

f530062

Consolidate a bunch of stuff

95c111e

Try bld.sh

479d381

Added echo statements

6be4364

aaronreidsmith added 13 commits February 17, 2020 13:00

Ensure VERSION is created before building

651e321

Clarifiying comment

7972910

Add lib check back in

de031d4

Remove brackets

5a60d47

Add lib check on all three platforms

f6296b7

Fix deploy variable

ac4ba81

Fix for windows

85c296e

Try which

2d13d0c

Try 7zip on windows

1d8959c

Use 7z instead of 7zip

0d7380f

Try force-local

77b211c

lib -> Lib

3943e9a

Ensure lib is created before deploying

cd6b1ea

aaronreidsmith added cicd Issues related to CI/CD platforms 🪲 🔨 : bug-fix labels Feb 17, 2020

aaronreidsmith requested review from charlesdrotar and tgsmith61591 February 17, 2020 21:15

Execute file, now that we have a previous step

e711cf6

charlesdrotar approved these changes Feb 18, 2020

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tgsmith61591 approved these changes Feb 18, 2020

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tgsmith61591 changed the title ~~[MRG] Fix conda deployments~~ [MRG+2] Fix conda deployments Feb 18, 2020

aaronreidsmith merged commit 942f284 into master Feb 18, 2020

aaronreidsmith deleted the fix-conda branch February 18, 2020 13:47

This was referenced Apr 24, 2020

First-party conda support #326

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[MRG+2] Remove conda support #325

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[MRG+2] Fix conda deployments #300

[MRG+2] Fix conda deployments #300

aaronreidsmith commented Feb 17, 2020

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aaronreidsmith commented Feb 18, 2020

TariqAHassan commented Mar 8, 2020

aaronreidsmith commented Mar 8, 2020

TariqAHassan commented Mar 9, 2020

aaronreidsmith commented Apr 27, 2020

[MRG+2] Fix conda deployments #300

[MRG+2] Fix conda deployments #300

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aaronreidsmith commented Feb 17, 2020

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aaronreidsmith commented Feb 18, 2020

TariqAHassan commented Mar 8, 2020

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TariqAHassan commented Mar 9, 2020

aaronreidsmith commented Apr 27, 2020