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Use current for GO #336

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Use current for GO #336

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cmungall
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snapshots should not be used, cc @kltm @dustine32

Alternatively, always use the OBO PURL

snapshots should not be used, cc @kltm @dustine32 

Alternatively, always use the OBO PURL
@oblodgett
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Can this be placed into the release-2.0.0 branch instead?

@sierra-moxon
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sierra-moxon commented Nov 15, 2018

The current errors here, are because the most recent DO file has double quotes in the header that make the ontobio parser choke on synonyms and cross references. We've submitted a ticket at DO and are awaiting the fix before.

@cmungall
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Ah, wasn't aware of this - @dustine32 would you mind submitting a ticket here: https://github.com/biolink/ontobio/issues

@dustine32
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@cmungall Sure I can enter a ticket. I can add detail after I take a look at the updated code. The DO file double quotes are probably tricking either ontobio or owltools into ignoring synonyms and cross references.

@dustine32
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Got this issue here: biolink/ontobio#271

@cmungall
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Ah OK, so it's a genuine syntax error, no action required then

@dustine32
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@cmungall Yep, I think once DO fixes their file it should work again.

@oblodgett oblodgett deleted the cmungall-patch-1 branch February 26, 2019 15:14
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5 participants