This repository contains the frontend code for Mutfunc: SARS-CoV-2, which is a resource containing variant effect predictions and annotations for all possible SARS-CoV-2 amino acid substitutions. The pipeline and analysis code is in a separate repository. The dataset and methods are described in detail in the Mutfunc: SARS-CoV-2 preprint.
Alistair Dunham, Gwendolyn M Jang, Monita Muralidharan, Danielle Swaney & Pedro Beltrao. 2021. A missense variant effect prediction and annotation resource for SARS-CoV-2 (bioRxiv)
The site is made using create-react-app with Reactjs and Material UI. PV - Protein Viewer and React MSA Viewer are used to display proteins and sequences.
The project can be installed and run with the usual npm
commands (npm install
, npm start
, npm run build
, etc.).
The project uses three main branches:
- master - The most recent WIP updates and features
- dev - Version currently being run on the test server
- prod - Version currently on the live server