Refactor exogenous_norm.smk to include runtime resource for align_pai…

…red and align_single rules (#206)

seqnado/workflow/rules/exogenous_norm.smk

@@ -6,14 +6,16 @@ use rule align_paired as align_paired_spikein with:
         bam=temp("seqnado_output/aligned/spikein/raw/{sample}.bam"),
     resources:
         mem=lambda wildcards, attempt: define_memory_requested(initial_value=8, attempts=attempt, scale=SCALE_RESOURCES),
+        runtime=lambda wildcards, attempt: define_time_requested(initial_value=4, attempts=attempt, scale=SCALE_RESOURCES),
+
 
 
 use rule align_single as align_single_spikein with:
     output:
         bam=temp("seqnado_output/aligned/spikein/raw/{sample}.bam"),
     resources:
         mem=lambda wildcards, attempt: define_memory_requested(initial_value=8, attempts=attempt, scale=SCALE_RESOURCES),
-
+        runtime=lambda wildcards, attempt: define_time_requested(initial_value=4, attempts=attempt, scale=SCALE_RESOURCES),
 
 use rule sort_bam as sort_bam_spikein with:
     input:
@@ -22,6 +24,7 @@ use rule sort_bam as sort_bam_spikein with:
         bam=temp("seqnado_output/aligned/spikein/sorted/{sample}.bam"),
     resources:
         mem=lambda wildcards, attempt: define_memory_requested(initial_value=8, attempts=attempt, scale=SCALE_RESOURCES),
+        runtime=lambda wildcards, attempt: define_time_requested(initial_value=1, attempts=attempt, scale=SCALE_RESOURCES),
     log:
         "seqnado_output/logs/aligned_spikein/{sample}_sort.log",