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Allow dask dataframe during entity creation #783

Merged
merged 116 commits into from
Jun 4, 2020
Merged

Allow dask dataframe during entity creation #783

merged 116 commits into from
Jun 4, 2020

Commits on Oct 24, 2019

  1. allow dask dataframe for entity creation

    Nate Parsons committed Oct 24, 2019
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  2. update create entity from dask df test

    Nate Parsons committed Oct 24, 2019
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  3. update test to specify variable types

    Nate Parsons committed Oct 24, 2019
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  4. add dask entityset relationships and dfs

    Nate Parsons committed Oct 24, 2019
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Commits on Nov 6, 2019

  1. multiple dask updates and add simple dask test

    Nate Parsons committed Nov 6, 2019
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Commits on Dec 19, 2019

  1. multiple updates for dask dataframes

    Nate Parsons committed Dec 19, 2019
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  2. update dask requirements

    Nate Parsons committed Dec 19, 2019
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  3. update dask test for test_hackathon

    Nate Parsons committed Dec 19, 2019
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Commits on Dec 20, 2019

  1. Merge branch 'master' into dask-entity

    @thehomebrewnerd
    thehomebrewnerd committed Dec 20, 2019
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  2. Merge branch 'dask-entity' of https://github.com/FeatureLabs/featuret… 

    …ools into dask-entity
    Nate Parsons committed Dec 20, 2019
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  3. fixes after merging in changes from master

    Nate Parsons committed Dec 20, 2019
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Commits on Jan 7, 2020

  1. initial updates for aggregation with dask dataframes

    Nate Parsons committed Jan 7, 2020
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Commits on Jan 8, 2020

  1. update dask tests

    Nate Parsons committed Jan 8, 2020
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  2. updated dask tests

    Nate Parsons committed Jan 8, 2020
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  3. dask multipartition tests

    Nate Parsons committed Jan 8, 2020
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Commits on Jan 9, 2020

  1. update requirements to fix circleci featuretools installation

    @frances-h
    frances-h committed Jan 9, 2020
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  2. generalize path to hackathon dataset

    @frances-h
    frances-h committed Jan 9, 2020
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  3. add hackathon data to manifest

    @frances-h
    frances-h committed Jan 9, 2020
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  4. bump circleci resource size for unit tests

    @frances-h
    frances-h committed Jan 9, 2020
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Commits on Jan 10, 2020

  1. fix test for py35, try bumping circleci resources again

    @frances-h
    frances-h committed Jan 10, 2020
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  2. remove hackathon test from circleci, reset resources

    @frances-h
    frances-h committed Jan 10, 2020
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  3. use pd.testing.assert_frame_equal with check_like=True for different … 

    …column orderings
    @frances-h
    frances-h committed Jan 10, 2020
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  4. additional test fixes

    @frances-h
    frances-h committed Jan 10, 2020
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  5. performance testing improvements

    Nate Parsons committed Jan 10, 2020
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  6. Merge branch 'dask-entity' of https://github.com/FeatureLabs/featuret… 

    …ools into dask-entity
    Nate Parsons committed Jan 10, 2020
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  7. add profiling script

    Nate Parsons committed Jan 10, 2020
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Commits on Jan 24, 2020

  1. add checking for df types when creating entityset

    Nate Parsons committed Jan 24, 2020
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Commits on Jan 27, 2020

  1. add test for training_window and fix text for cutoff time df

    Nate Parsons committed Jan 27, 2020
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Commits on Jan 28, 2020

  1. update dask tests for consistency

    Nate Parsons committed Jan 28, 2020
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Commits on Jan 30, 2020

  1. add test for approximate (doesn't pass currently)

    Nate Parsons committed Jan 30, 2020
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  2. add test for adding last_time_index to dask entityset

    Nate Parsons committed Jan 30, 2020
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  3. add dask test for secondary_time_index

    Nate Parsons committed Jan 30, 2020
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Commits on Jan 31, 2020

  1. fix issue with TimeSince primitive with dask entityset

    Nate Parsons committed Jan 31, 2020
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Commits on Feb 13, 2020

  1. update hackathon test

    Nate Parsons committed Feb 13, 2020
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  2. remove some easy to remove computes

    @frances-h
    frances-h committed Feb 13, 2020
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Commits on Feb 21, 2020

  1. Merge branch 'master' into dask-entity

    @frances-h
    frances-h committed Feb 21, 2020
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  2. fix Pandas 1.0 issues

    @frances-h
    frances-h committed Feb 21, 2020
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Commits on Feb 24, 2020

  1. various updates for dask entities

    Nate Parsons committed Feb 24, 2020
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  2. Merge branch 'dask-entity' of https://github.com/FeatureLabs/featuret… 

    …ools into dask-entity
    Nate Parsons committed Feb 24, 2020
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  3. lint fix plus missing_ids change

    Nate Parsons committed Feb 24, 2020
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  4. fix hackathon test

    Nate Parsons committed Feb 24, 2020
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  5. Merge branch 'master' into dask-entity

    @thehomebrewnerd
    thehomebrewnerd committed Feb 24, 2020
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  6. update requirements.txt

    Nate Parsons committed Feb 24, 2020
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Commits on Feb 25, 2020

  1. fixes for windows tests

    Nate Parsons committed Feb 25, 2020
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  2. dask dfs fixes

    Nate Parsons committed Feb 25, 2020
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Commits on Mar 3, 2020

  1. update aggregation primitives to use dask aggregation

    @frances-h
    frances-h committed Mar 3, 2020
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Commits on Mar 16, 2020

  1. add temp tests directory

    Nate Parsons committed Mar 16, 2020
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Commits on Mar 18, 2020

  1. update temporary tests

    Nate Parsons committed Mar 18, 2020
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Commits on Mar 19, 2020

  1. update agg test file

    Nate Parsons committed Mar 19, 2020
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Commits on Mar 24, 2020

  1. update encode_features for dask

    Nate Parsons committed Mar 24, 2020
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  2. featuretools/dask-tests-tmp/test_instacart.py

    Nate Parsons committed Mar 24, 2020
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  3. update dask tests

    Nate Parsons committed Mar 24, 2020
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  4. update entity creation code

    Nate Parsons committed Mar 24, 2020
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  5. lint and test updates

    Nate Parsons committed Mar 24, 2020
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Commits on Mar 25, 2020

  1. instacart test updates

    Nate Parsons committed Mar 25, 2020
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  2. lint fix

    Nate Parsons committed Mar 25, 2020
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  3. remove leftover head() call

    Nate Parsons committed Mar 25, 2020
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Commits on Mar 31, 2020

  1. fix encode features inplace test

    @frances-h
    frances-h committed Mar 31, 2020
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  2. fix some issues with dask aggregations

    @frances-h
    frances-h committed Mar 31, 2020
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Commits on Apr 1, 2020

  1. various dask updates

    Nate Parsons committed Apr 1, 2020
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Commits on Apr 3, 2020

  1. update instacart test files

    Nate Parsons committed Apr 3, 2020
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Commits on Apr 6, 2020

  1. instacart test updates

    Nate Parsons committed Apr 6, 2020
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Commits on Apr 9, 2020

  1. instacart test updates

    Nate Parsons committed Apr 9, 2020
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  2. cutoff time updates in cfm

    Nate Parsons committed Apr 9, 2020
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  3. entity updates for _handle_time

    Nate Parsons committed Apr 9, 2020
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  4. instacart test update

    Nate Parsons committed Apr 9, 2020
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  5. update add_last_time_index to use dask

    @frances-h
    frances-h committed Apr 9, 2020
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  6. Merge branch 'dask-entity' of https://github.com/FeatureLabs/featuret… 

    …ools into dask-entity
    Nate Parsons committed Apr 9, 2020
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Commits on Apr 10, 2020

  1. instacart test updates

    Nate Parsons committed Apr 10, 2020
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Commits on Apr 13, 2020

  1. add dask test for time_window

    Nate Parsons committed Apr 13, 2020
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  2. update add_last_time_indeices

    @frances-h
    frances-h committed Apr 13, 2020
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  3. improve Entity.query_by_values() implementation for Dask

    Nate Parsons committed Apr 13, 2020
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  4. update dask tests

    Nate Parsons committed Apr 13, 2020
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  5. lint fix

    Nate Parsons committed Apr 13, 2020
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Commits on Apr 14, 2020

  1. revert entityset __repr__ code back to master code

    Nate Parsons committed Apr 14, 2020
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Commits on Apr 15, 2020

  1. Fix issue with make_index and Dask entities (#895) 

    * start test for dask with make_index

* update dask test for make_index

* remove unnecessary code in _create_index()

* update dask make index test
    @thehomebrewnerd
    thehomebrewnerd committed Apr 15, 2020
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Commits on Apr 20, 2020

  1. Update set_time_index code path for Dask dataframes and impacted test (… 

    …#914)

* set_time_index converts variable type in dask

* remove uses_full_entity primitives

* use groupby_trans_primitives for uses_full_entity primitives

* remove groupby features (currently unsupported in dask)

* simplify logic for getting time_type
    @rwedge
    rwedge committed Apr 20, 2020
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Commits on Apr 22, 2020

  1. Merge branch 'master' into dask-entity

    @thehomebrewnerd
    thehomebrewnerd committed Apr 22, 2020
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Commits on Apr 23, 2020

  1. Update dask tests (#920) 

    * remove unsupported primitives, update tests

* update test_aggregation to remove ambiguity

* don't run windows tests in parallel to find failing

* skip dask-tmp-tests

* revert circleci config

* skip tmp dask tests on circleci for windows

* lint

* move ignore dask-temp-tests to setup.cfg
    @frances-h
    frances-h committed Apr 23, 2020
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Commits on Apr 24, 2020

  1. Compose compatability for Dask (#909) 

    * convert pass_through df to pandas for dask

* add compose to test_instacart, lint

* add test to check compose label_times accepted

* lint and add composeml to test requirements

* remove force to pandas, add dask compose test

* use >=0.2.0 for composeml

* test fixes

* add tests
    @frances-h
    frances-h committed Apr 24, 2020
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Commits on Apr 29, 2020

  1. Refactor update_feature_columns (#924) 

    * refactor update_feature_columns

* update primitives to work with new update_feature_columns code

* update dask tests to skip unsupported primitives

* lint fix

* fix test_aggregation

* lint-fix

* remove check for list input in NumWords and NumCharacters

* remove check for list input from binary transform primitives
    @thehomebrewnerd
    thehomebrewnerd committed Apr 29, 2020
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  2. Dask DFS errors with unsupported primitives (#925) 

    * add dask_compatible flag to primitives

* add tests

* remove unsupported from default, fix tests

* lint

* percentile needs full entity

* update error message
    @frances-h
    frances-h committed Apr 29, 2020
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Commits on May 1, 2020

  1. Merge branch 'master' into dask-entity

    @frances-h
    frances-h committed May 1, 2020
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Commits on May 4, 2020

  1. Error if dask dataframe used for cutoff_time (#931) 

    * error if dask dataframe used for cutoff_time

* dfs compute with warning

* split out test

Co-authored-by: Roy Wedge <rwedge@featurelabs.com>
    @frances-h @rwedge
    frances-h and rwedge committed May 4, 2020
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  2. Error if no vtypes given for Dask entity (#929) 

    * error if no vtypes supplied

* lint

Co-authored-by: Roy Wedge <rwedge@featurelabs.com>
    @frances-h @rwedge
    frances-h and rwedge committed May 4, 2020
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Commits on May 5, 2020

  1. Restore len() call for Pandas in EntitySets.add_relationships (#943) 

    * restore len check for pandas and add test

* add dtype check to test
    @frances-h
    frances-h committed May 5, 2020
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Commits on May 8, 2020

  1. error if feature_matrix is not Pandas df (#955)

    @frances-h
    frances-h committed May 8, 2020
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  2. error if approximate or training window used with dask (#954)

    @frances-h
    frances-h committed May 8, 2020
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Commits on May 11, 2020

  1. Revert changes in infer_variable_types (#957) 

    * update infer variable types

* remove unnecessary change
    @thehomebrewnerd
    thehomebrewnerd committed May 11, 2020
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Commits on May 12, 2020

  1. Updates for running home credit example with Dask (#953) 

    * home credit tests

* update home credit test

* Improve column assignment for trans features

* update home credit test

* testing updates

* home credit test updates

* home credit notebook update

* home credit test updates

* home credit test updates

* home credit test updates

* home credit test updates

* home credit updates

* update feature_set_calculator.py

* remove unnecessary repartitioning from notebook

* update notebook text

* update notebook to use os.path.join
    @thehomebrewnerd
    thehomebrewnerd committed May 12, 2020
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  2. Merge branch 'master' of https://github.com/FeatureLabs/featuretools … 

    …into dask-entity
    Nate Parsons committed May 12, 2020
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Commits on May 13, 2020

  1. Update list_primitives to indicate Dask compatibility (#963) 

    * update ft.list_primitives to include dask_compatible column

* fix merge mess
    @thehomebrewnerd
    thehomebrewnerd committed May 13, 2020
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Commits on May 15, 2020

  1. Add Dask support to EqualScalar and NotEqualScalar primitives (#967) 

    * add dask support to EqualScalar and NotEqualScalar primitives

* remove pd.Series cast
    @thehomebrewnerd
    thehomebrewnerd committed May 15, 2020
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Commits on May 18, 2020

  1. Add demo notebook for using Dask with Instacart dataset (#956) 

    * add instacart with dask notebook example

* update notebook text

* remove %%time from notebook cells
    @thehomebrewnerd
    thehomebrewnerd committed May 18, 2020
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Commits on May 20, 2020

  1. Dask Test Updates (#973) 

    * remove dask hackathon test

* reorganize and remove unnecessary tests

* remove dask worker files

* remove dask-tests-tmp directory

* remove dask_profiling.py

* update Makefile and MANIFEST.in
    @thehomebrewnerd
    thehomebrewnerd committed May 20, 2020
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  2. Dask entityset serialization/deserialization (#981) 

    * add deserialize support for dask entities

* add tests

* error if to_pickle, fix tests

* add to_pickle errors test

* bump schema version
    @frances-h
    frances-h committed May 20, 2020
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Commits on May 22, 2020

  1. Merge branch 'master' of https://github.com/FeatureLabs/featuretools … 

    …into dask-entity
    Nate Parsons committed May 22, 2020
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Commits on May 26, 2020

  1. Merge branch 'master' of https://github.com/FeatureLabs/featuretools … 

    …into dask-entity
    Nate Parsons committed May 26, 2020
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  2. fix merge issue

    Nate Parsons committed May 26, 2020
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Commits on May 27, 2020

  1. Support numeric time index for Dask entityset (#992) 

    * support numeric time index for Dask entityset

* remove unused test fixture

* refactor pass through cols merging

* fix dask test with cutoff times
    @thehomebrewnerd
    thehomebrewnerd committed May 27, 2020
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  2. Update docs for using Dask entitysets (#965) 

    * initial doc updates for dask

* update parallel computation guide

* finish initial docs for using dask entitysets

* update EntitySet styling in docs

* various doc additions and improvements

* wording updates

* label dask entityset support as beta and add link for reporting issues

* clear faq notebook output

* remove dask_profiling.py

* fix spelling errors

* update Dask guide
    @thehomebrewnerd
    thehomebrewnerd committed May 27, 2020
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Commits on May 29, 2020

  1. Dask cleanup (#964) 

    * initial clean + revert unused

* lint

* more reverts

* remove unused check
    @frances-h
    frances-h committed May 29, 2020
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  2. Run unit tests on pandas and dask entitysets (#999) 

    * rename es to pd_es and parameterize es

* initial work on synthesis tests

* more synthesis test updates

* update utils_test

* update mock_customer_es fixture

* start primitive_tests updates

* update primitive_tests

* parameterize diamond_es

* parameterize games_es fixture

* update primitive_tests

* fix dfs tests with compose

* synthesis test updates

* first pass, failing tests need investigation

* lint and add missing dask tests to test_es.py

* update tests in test_last_time_index.py

* fix test_dask_primitives.py

* use dd.to_numeric for dask type conversions

* update test_es to xfail

* xfail synthesis tests

* update entityset_tests with xfail

* xfail primitive_tests

* xfail computational backend tests

* fix failing dask test

* lint

* fix tests and clean up

* cleanup and xfail plotting

* small fixes

Co-authored-by: Nate Parsons <nate.parsons@alteryx.com>
    @frances-h
    frances-h and Nate Parsons committed May 29, 2020
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  3. Merge branch 'master' into dask-entity

    @frances-h
    frances-h committed May 29, 2020
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  4. changelog

    @frances-h
    frances-h committed May 29, 2020
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  5. changelog

    @frances-h
    frances-h committed May 29, 2020
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  6. revert changes

    Nate Parsons committed May 29, 2020
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Commits on Jun 2, 2020

  1. Dask reverts for performance (#1008) 

    * reverts for performance

* update compose tests
    @frances-h
    frances-h committed Jun 2, 2020
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  2. Merge branch 'master' into dask-entity

    @rwedge
    rwedge committed Jun 2, 2020
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Commits on Jun 3, 2020

  1. remove unused code and update docs (#1012)

    @thehomebrewnerd
    thehomebrewnerd committed Jun 3, 2020
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  2. Merge branch 'master' into dask-entity

    @rwedge
    rwedge committed Jun 3, 2020
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  3. Uncomment Future Release section

    @rwedge
    rwedge committed Jun 3, 2020
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  4. fix docs build

    @rwedge
    rwedge committed Jun 3, 2020
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Commits on Jun 4, 2020

  1. Dask documentation improvements (#1015) 

    * improve Dask docs

* combine parallel computation and performance guides

* more doc updates

* fix note text
    @thehomebrewnerd
    thehomebrewnerd committed Jun 4, 2020
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  2. Merge branch 'master' into dask-entity

    @thehomebrewnerd
    thehomebrewnerd committed Jun 4, 2020
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  3. Update setup.cfg

    @rwedge
    rwedge committed Jun 4, 2020
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