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Branch 2.2 merge #232

Merged
merged 14 commits into from May 15, 2018
Merged

Branch 2.2 merge #232

merged 14 commits into from May 15, 2018

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markhamstra
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squito and others added 14 commits April 9, 2018 11:31
SPARK-19276 ensured that FetchFailures do not get swallowed by other
layers of exception handling, but it also meant that a killed task could
look like a fetch failure.  This is particularly a problem with
speculative execution, where we expect to kill tasks as they are reading
shuffle data.  The fix is to ensure that we always check for killed
tasks first.

Added a new unit test which fails before the fix, ran it 1k times to
check for flakiness.  Full suite of tests on jenkins.

Author: Imran Rashid <irashid@cloudera.com>

Closes apache#20987 from squito/SPARK-23816.

(cherry picked from commit 10f45bb)
Signed-off-by: Marcelo Vanzin <vanzin@cloudera.com>
…enerate a wrong result by codegen.

`EqualNullSafe` for `FloatType` and `DoubleType` might generate a wrong result by codegen.

```scala
scala> val df = Seq((Some(-1.0d), None), (None, Some(-1.0d))).toDF()
df: org.apache.spark.sql.DataFrame = [_1: double, _2: double]

scala> df.show()
+----+----+
|  _1|  _2|
+----+----+
|-1.0|null|
|null|-1.0|
+----+----+

scala> df.filter("_1 <=> _2").show()
+----+----+
|  _1|  _2|
+----+----+
|-1.0|null|
|null|-1.0|
+----+----+
```

The result should be empty but the result remains two rows.

Added a test.

Author: Takuya UESHIN <ueshin@databricks.com>

Closes apache#21094 from ueshin/issues/SPARK-24007/equalnullsafe.

(cherry picked from commit f09a9e9)
Signed-off-by: gatorsmile <gatorsmile@gmail.com>
…n text-based Hive table

## What changes were proposed in this pull request?

TableReader would get disproportionately slower as the number of columns in the query increased.

I fixed the way TableReader was looking up metadata for each column in the row. Previously, it had been looking up this data in linked lists, accessing each linked list by an index (column number). Now it looks up this data in arrays, where indexing by column number works better.

## How was this patch tested?

Manual testing
All sbt unit tests
python sql tests

Author: Bruce Robbins <bersprockets@gmail.com>

Closes apache#21043 from bersprockets/tabreadfix.
## What changes were proposed in this pull request?
Fix comment. Change `BroadcastHashJoin.broadcastFuture` to `BroadcastExchangeExec.relationFuture`: https://github.com/apache/spark/blob/d28d5732ae205771f1f443b15b10e64dcffb5ff0/sql/core/src/main/scala/org/apache/spark/sql/execution/exchange/BroadcastExchangeExec.scala#L66

## How was this patch tested?
N/A

Author: seancxmao <seancxmao@gmail.com>

Closes apache#21113 from seancxmao/SPARK-13136.

(cherry picked from commit c303b1b)
Signed-off-by: hyukjinkwon <gurwls223@apache.org>
## What changes were proposed in this pull request?
Shell escaped the name passed to spark-submit and change how conf attributes are shell escaped.

## How was this patch tested?
This test has been tested manually with Hive-on-spark with mesos or with the use case described in the issue with the sparkPi application with a custom name which contains illegal shell characters.

With this PR, hive-on-spark on mesos works like a charm with hive 3.0.0-SNAPSHOT.

I state that this contribution is my original work and that I license the work to the project under the project’s open source license

Author: Bounkong Khamphousone <bounkong.khamphousone@ebiznext.com>

Closes apache#21014 from tiboun/fix/SPARK-23941.

(cherry picked from commit 6782359)
Signed-off-by: Marcelo Vanzin <vanzin@cloudera.com>
Fetch failure lead to multiple tasksets which are active for a given
stage.  While there is only one "active" version of the taskset, the
earlier attempts can still have running tasks, which can complete
successfully.  So a task completion needs to update every taskset
so that it knows the partition is completed.  That way the final active
taskset does not try to submit another task for the same partition,
and so that it knows when it is completed and when it should be
marked as a "zombie".

Added a regression test.

Author: Imran Rashid <irashid@cloudera.com>

Closes apache#21131 from squito/SPARK-23433.

(cherry picked from commit 94641fe)
Signed-off-by: Imran Rashid <irashid@cloudera.com>
… should verify the downloaded file

## What changes were proposed in this pull request?

This is a backport of apache#21210 because `branch-2.2` also faces the same failures.

Although [SPARK-22654](https://issues.apache.org/jira/browse/SPARK-22654) made `HiveExternalCatalogVersionsSuite` download from Apache mirrors three times, it has been flaky because it didn't verify the downloaded file. Some Apache mirrors terminate the downloading abnormally, the *corrupted* file shows the following errors.

```
gzip: stdin: not in gzip format
tar: Child returned status 1
tar: Error is not recoverable: exiting now
22:46:32.700 WARN org.apache.spark.sql.hive.HiveExternalCatalogVersionsSuite:

===== POSSIBLE THREAD LEAK IN SUITE o.a.s.sql.hive.HiveExternalCatalogVersionsSuite, thread names: Keep-Alive-Timer =====

*** RUN ABORTED ***
  java.io.IOException: Cannot run program "./bin/spark-submit" (in directory "/tmp/test-spark/spark-2.2.0"): error=2, No such file or directory
```

This has been reported weirdly in two ways. For example, the above case is reported as Case 2 `no failures`.

- Case 1. [Test Result (1 failure / +1)](https://amplab.cs.berkeley.edu/jenkins/view/Spark%20QA%20Test%20(Dashboard)/job/spark-master-test-sbt-hadoop-2.7/4389/)
- Case 2. [Test Result (no failures)](https://amplab.cs.berkeley.edu/jenkins/view/Spark%20QA%20Test%20(Dashboard)/job/spark-master-test-maven-hadoop-2.6/4811/)

This PR aims to make `HiveExternalCatalogVersionsSuite` more robust by verifying the downloaded `tgz` file by extracting and checking the existence of `bin/spark-submit`. If it turns out that the file is empty or corrupted, `HiveExternalCatalogVersionsSuite` will do retry logic like the download failure.

## How was this patch tested?

Pass the Jenkins.

Author: Dongjoon Hyun <dongjoon@apache.org>

Closes apache#21232 from dongjoon-hyun/SPARK-23489-2.
…rectly

## What changes were proposed in this pull request?

It's possible that Accumulators of Spark 1.x may no longer work with Spark 2.x. This is because `LegacyAccumulatorWrapper.isZero` may return wrong answer if `AccumulableParam` doesn't define equals/hashCode.

This PR fixes this by using reference equality check in `LegacyAccumulatorWrapper.isZero`.

## How was this patch tested?

a new test

Author: Wenchen Fan <wenchen@databricks.com>

Closes apache#21229 from cloud-fan/accumulator.

(cherry picked from commit 4d5de4d)
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
This PR aims to bump Py4J in order to fix the following float/double bug.
Py4J 0.10.5 fixes this (py4j/py4j#272) and the latest Py4J is 0.10.6.

**BEFORE**
```
>>> df = spark.range(1)
>>> df.select(df['id'] + 17.133574204226083).show()
+--------------------+
|(id + 17.1335742042)|
+--------------------+
|       17.1335742042|
+--------------------+
```

**AFTER**
```
>>> df = spark.range(1)
>>> df.select(df['id'] + 17.133574204226083).show()
+-------------------------+
|(id + 17.133574204226083)|
+-------------------------+
|       17.133574204226083|
+-------------------------+
```

Manual.

Author: Dongjoon Hyun <dongjoon@apache.org>

Closes apache#18546 from dongjoon-hyun/SPARK-21278.

(cherry picked from commit c8d0aba)
Signed-off-by: Marcelo Vanzin <vanzin@cloudera.com>
`LogicalPlan.resolve(...)` uses linear searches to find an attribute matching a name. This is fine in normal cases, but gets problematic when you try to resolve a large number of columns on a plan with a large number of attributes.

This PR adds an indexing structure to `resolve(...)` in order to find potential matches quicker. This PR improves the reference resolution time for the following code by 4x (11.8s -> 2.4s):

``` scala
val n = 4000
val values = (1 to n).map(_.toString).mkString(", ")
val columns = (1 to n).map("column" + _).mkString(", ")
val query =
  s"""
     |SELECT $columns
     |FROM VALUES ($values) T($columns)
     |WHERE 1=2 AND 1 IN ($columns)
     |GROUP BY $columns
     |ORDER BY $columns
     |""".stripMargin

spark.time(sql(query))
```

Existing tests.

Author: Herman van Hovell <hvanhovell@databricks.com>

Closes apache#14083 from hvanhovell/SPARK-16406.
(cherry picked from commit cc613b5)
Signed-off-by: Marcelo Vanzin <vanzin@cloudera.com>
(cherry picked from commit 323dc3a)
Signed-off-by: Marcelo Vanzin <vanzin@cloudera.com>
(cherry picked from commit 628c7b5)
Signed-off-by: Marcelo Vanzin <vanzin@cloudera.com>
(cherry picked from commit 16cd9ac)
Signed-off-by: Marcelo Vanzin <vanzin@cloudera.com>
@markhamstra
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JMWG

@csd-jenkins
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Saw merge directive 'JMWG'. CSD Jenkins auto merging

@csd-jenkins csd-jenkins merged commit 4f7963c into alteryx:csd-2.2 May 15, 2018
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