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  • Columbia University
  • New York


@broadinstitute @dpeerlab @HumanCellAtlas @DataBiosphere @spacetx @czi-hca-comp-tools

Popular repositories

  1. seqc

    Single-Cell Sequencing Quality Control and Processing Software

    Python 14 3

  2. cromwell-manager

    python tools for interaction with cromwell servers

    Jupyter Notebook 2

  3. simpleseq

    Simple tools for processing single-cell sequencing data


  4. notebooks

  5. Rut

    Resampled U-Test for non-parametric comparison of two or more distributions with unequal sampling and variance


  6. h5

    Simple wrapper around pandas hdf5 method to allow safe usage

    Python 1

1,042 contributions in the last year

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Contribution activity

October 2018

Created a pull request in spacetx/starfish that received 5 comments

osmFISH notebook fixes

@dganguli There are some issues with the notebook that I'm not sure how to solve. I suspect some things got deleted. Can you take a look? The major…

+1,221 −151 5 comments

Created an issue in spacetx/starfish that received 7 comments

Do users want to be able to store tissue type in spaceTx-format?

It came up in conversation with @zperova and @hewgreen that many of our experiments may encompass borders between defined tissue regions. Larger at…


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