GitHub is home to over 40 million developers working together. Join them to grow your own development teams, manage permissions, and collaborate on projects.
Single-Cell Sequencing Quality Control and Processing Software
Harmony framework for connecting scRNA-seq data from discrete time points
Subpopulation detection in high-dimensional single-cell data
MAGIC - imputation and de-noising single-cell RNA seq data sets
Single cell trajectory detection
Single-Cell Analysis in Python. Scales to >1M cells.
Doublet detection in single-cell RNA-seq data.
An implementation of MNN (Mutual Nearest Neighbors) correct in python.
10x Genomics Single Cell 3' Gene Expression and VDJ Assembly
A copy of old lab website from Columbia (https://dpeerlab.github.io/dpeerlab-website/index.html). Content is not updated since 2017. New website: https://www.mskcc.org/research-areas/labs/dana-pe-er
COpy Number and EXpression In Cancer (CONEXIC)
Wishbone is an algorithm to align cells along developmental trajectories with branches
Matlab GUI for analysis of mass cytometry data
R Codebase for BISCUIT: Infinite Mixture Model to cluster and impute single cells.
Utilities for large scale distributed single cell data processing
Simple wrapper around pandas hdf5 method to allow safe usage