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A comprehensive update to the PLINK association analysis toolset. Beta testing of the first new version (1.90), focused on speed and memory efficiency improvements, is finishing up. Development is now focused on building out support for multiallelic, phased, and dosage data in PLINK 2.0.

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Modified dose2plink

This repo has been forked from https://github.com/chrchang/plink-ng.

Modifications have been made to plink-ng/1.9/dose2plink.c in order to be able to compile with system zlib.

In order to compile plink-ng/1.9/dose2plink.c make sure gcc and zlib is installed on your machine such as:

  sudo apt-get install zlib1g-dev
  sudo apt install build-essential

in ubuntu.

To compile you can do the following:

  cd plink-ng/1.9/
  gcc dose2plink.c -lz -o /path/to/file/dose2plink

You can then add dose2plink to your path by adding it to your environment, such as:

  export PATH=$PATH:/path/to/file/dose2plink

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A comprehensive update to the PLINK association analysis toolset. Beta testing of the first new version (1.90), focused on speed and memory efficiency improvements, is finishing up. Development is now focused on building out support for multiallelic, phased, and dosage data in PLINK 2.0.

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