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Update README.md
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kga1978 committed Jun 27, 2017
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# Viral Sequence Analysis Pipelines
#### Viral Sequence Analysis Pipelines

Tools used
**Tools used**

* [Novoalign v3.04.04](http://www.novocraft.com/support/download/)
* [Trimmomatic v0.36](http://www.usadellab.org/cms/index.php?page=trimmomatic)
* [Samtools v1.3.1](http://www.htslib.org/download/)
* [Snakemake v3.8.1](https://bitbucket.org/snakemake/snakemake/)
* [Kraken](http://genomebiology.biomedcentral.com/articles/10.1186/gb-2014-15-3-r46)

Dependencies for plot_coverage.py
**Dependencies for plot_coverage.py**

* [Pandas](http://pandas.pydata.org/)

Docker

**Docker**
Coming soon ..

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