| Scripps ID | Patient ID | Sample type | Quality score | % Coverage | Average Depth | Onset | Collection | Days post onset | Local or travel | Location of infection | GE/ul RNA | GE/mL sample | Sequencing status | Consensus name | Merged Bam File |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| FL001Sa | 001 | Saliva | *** | 99.71 | 46616.27 | 2016.03.18 | 2016.03.22 | 4 | Travel | Martinique | 11 | 3.3E+03 | coding-complete | ZF1_01Sa_XX_2016-03-22 usa_ex_martinique | ZF1.c1.Sa.a1.l1.l3.l4.r1 |
| FL008U | 008 | Urine | *** | 90.07 | 35012.49 | 2016.06.15 | 2016.06.21 | 6 | Travel | Puerto Rico | 4 | 1.1E+03 | coding-complete | ZF8_08U_XX_2016-06-21 usa_ex_puerto_rico | ZF8.c1.UR.a1.l1.l2.r1 |
| FL010U | 010 | Urine | **** | 97.69 | 55330.48 | 2016.06.17 | 2016.06.22 | 5 | Local? | USA: Florida | 213 | 6.1E+04 | coding-complete | ZF10_10U_KX842499 2016-06-22 usa_ex_USA | ZF10.c1.UR.a1.l1.r1 |
| FL016U | 016 | Urine | *** | 99.88 | 75158.72 | 2016.06.28 | 2016.07.03 | 5 | Travel | Puerto Rico | 14 | 4.0E+03 | coding-complete | ZF16_16U_XX_2016-07-03 usa_ex_puerto_rico | ZF16.c1.UR.a1.l1.l2.l3.l4.l5.r1 |
| FL021U | 021 | Urine | *** | 97.45 | 52361.36 | 2016.07.09 | 2016.07.19 | 10 | Local | USA: Florida | 50 | 1.4E+04 | coding-complete | ZF21_21U_XX_2016-07-19 usa | ZF21.c1.UR.a1.l1.l2.l3.r1 |
| FL022U | 022 | Urine | *** | 97.77 | 51135.60 | 2016.07.16 | 2016.07.16 | 6 | Local | USA: Florida | 11 | 3.0E+03 | coding-complete | ZF22_22U_XX_2016-07-16 usa | ZF22.c1.UR.a1.l1.l2.l3.l4.r1 |
| FL030U | 030 | Urine | *** | 99.75 | 57779.63 | 2016.07.31 | 2016.08.02 | 2 | Local | USA: Florida | 36 | 1.0E+04 | coding-complete | ZF30_30U_XX_2016-08-02 usa | ZF30.c1.UR.a1.l1.l2.l3.r1 |
| FL032U | 032 | Urine | *** | 99.75 | 51483.94 | 2016.07.29 | 2016.08.05 | 7 | Local | USA: Florida | 75 | 2.1E+04 | coding-complete | ZF32_32U_XX_2016-08-05 usa | ZF32.c1.UR.a1.l1.l2.l3.r1 |
| FL036Se | 036 | Serum | *** | 99.73 | 101435.66 | 2016.08.02 | 2016.08.04 | 2 | Local | USA: Florida | 11 | 3.2E+03 | coding-complete | FL036SE_XX_2016-08-02_usa | ZF36.c1.SR.a1.l1.l2.l3.l4.l5.l6.l7.r1.l5.l6.r2 |
| FL038U | 038 | Urine | *** | 99.76 | 81750.77 | 2016.08.04 | 2016.08.05 | 1 | Local | USA: Florida | 38 | 1.1E+04 | coding-complete | ZF38_38U_XX_2016-08-05 usa | ZF38.c1.UR.a1.l1.l2.l3.l4.r1 |
| FL039U | 039 | Urine | **** | 99.75 | 70253.99 | 2016.08.12 | 2016.08.17 | 5 | Local | USA: Florida | 1276 | 3.6E+05 | coding-complete | ZF39_39U_XX_2016-08-17 usa | ZF39.c1.UR.a1.l1.l2.l3.r1 |
| Hu0015Sa | Hu0015 | Saliva | *** | 99.75 | 89934.25 | 2016.08.19 | 2016.08.24 | 5 | Local | USA: Florida | 38 | 21610.23 | coding-complete | ZL2_Hu0015_KX832731 2016-08-22 usa | ZL2.c1.SA.a1.l1.l2.r1 |
| FL01M | 7501 | Mosquito | **** | 99.75 | 141038.31 | 2016.08.22 | Local | USA: Florida | 4563 | 9.1E+06 | coding-complete | Ae-aegypti_ZM1_7501_KX838904_2016-08-22_usa | ZM1.c1.MO.a1.l1.l2.r1 | ||
| FL02M | 7719 | Mosquito | **** | 99.74 | 137263.85 | 2016.08.23 | Local | USA: Florida | 279 | 5.6E+05 | coding-complete | Ae-aegypti_ZM2_7719_KX838905_2016-08-23_usa | ZM2.c1.MO.a1.l1.l2.r1 | ||
| FL03M | 7727 | Mosquito | **** | 99.83 | 139787.57 | 2016.08.23 | Local | USA: Florida | 22549 | 4.5E+07 | coding-complete | Ae-aegypti_ZM3_7727_KX838906_2016-08-23_usa | ZM3.c1.MO.a1.l1.l2.r1 | ||
| FL04M | 16-10416 | Mosquito | **** | 99.72 | 45505.39 | 2016.09.04 | Local | USA: Florida | 102 | 4.4E+04 | coding-complete | Ae-aegypti_ZM4_16-10416_XX_2016-09-04_usa | ZM4.c1.MO.a1.l1.l2.r1 | ||
| FL05M | 16-3125 | Mosquito | **** | 99.74 | 52530.58 | 2016.09.09 | Local | USA: Florida | 447 | 1.9E+05 | coding-complete | Ae-aegypti_ZM5_16-3125_XX_2016-09-09_usa | ZM5.c1.MO.a1.l1.l2.r1 | ||
| FL06M | Mosquito | **** | 99.71 | 25181.33 | 2016.09.20 | Local | USA: Florida | coding-complete | FL06M_XX_2016-09-20_usa | ZM6.c1.MO.a1.l1.l2.r1 | |||||
| FL08M | pool#8 | Mosquito | **** | 97.70 | 68629.61 | 2016.10.05 | Local | USA: Florida | 61 | 2.6E+04 | coding-complete | FL08M_XX_2016-10-05_usa | ZM8.c1.MO.a1.l1.l2.r1 | ||
| ZC188Se | 423568715 | Serum | **** | 98.26 | 29394.90 | 2016.01.16 | Colombia | 36 | 1.5E+04 | coding-complete | ZC188_423568715_XX_2016-01-16_colombia | ZC188.c1.SR.a1.l3.l4.r1 | |||
| ZC192Se | 423401315 | Serum | **** | 98.36 | 30396.29 | 2016.01.07 | Colombia | 39 | 1.7E+04 | coding-complete | ZC192_423401315_XX_2016-01-07_colombia | ZC192.c1.SR.a1.l3.l4.r1 | |||
| ZC204Se | 424439915 | Serum | **** | 99.74 | 29003.25 | 2016.01.06 | Colombia | 48 | 2.1E+04 | coding-complete | ZC204_424439915_XX_2016-01-05_colombia | ZC204.c1.SR.a1.l1.l2.r1 | |||
| ZC207Se | 423217515 | Serum | **** | 96.68 | 19477.70 | 2016.01.09 | Colombia | 16 | 6.7E+04 | coding-complete | ZC207_423217515_XX_2016-01-09_colombia | ZC207.c1.SR.a1.l1.l2.r1 | |||
| ZC199Se | 4238001315 | Serum | *** | 97.44 | 98358.93 | 2016.01.10 | Colombia | 10 | 4.3E+03 | coding-complete | ZC199Se_XX_2016-01-10_colombia | ZC199.c1.SR.a1.l1.l2.l3.l4.l5.l6.l7.r1 | |||
| Hu0046Sa | Hu0046 | Saliva | **** | 98.20 | 10498 | 2017.04.18 | 2017.04.19 | 1 | travel | Cuba | 16 | 63830 | coding-complete | Hu0046SA_XX_2017-04-19_usa_ex_cuba.fasta | ZT1.c1.SA.a1.l1.l2.r1 |
**** Complete coding sequence, no apparent contamination in aligned bam file
*** Complete coding sequence, some contamination in aligned bam file (confident in consensus)
** Partial coding sequence, no apparent contamination in aligned bam file
* Partial coding sequence, some contamination in aligned bam file