Revert index in img_data[0] to img_data[1] (#557)

angelolab · May 19, 2022 · 8bc87c2 · 8bc87c2
1 parent ad9fd61
commit 8bc87c2
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/ark/utils/data_utils.py b/ark/utils/data_utils.py
@@ -229,7 +229,7 @@ def generate_pixel_cluster_mask(fovs, base_dir, tiff_dir, chan_file,
         y_coords = fov_data['column_index'].values
 
         # convert to 1D indexing
-        coordinates = x_coords * img_data.shape[0] + y_coords
+        coordinates = x_coords * img_data.shape[1] + y_coords
 
         # get the cooresponding cluster labels for each pixel
         cluster_labels = list(fov_data[pixel_cluster_col])