removes print statement and adds justification to try/except block

angelolab · Aug 9, 2022 · a7a8f8b · a7a8f8b
1 parent c96cb3f
commit a7a8f8b
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/ark/analysis/spatial_analysis.py b/ark/analysis/spatial_analysis.py
@@ -196,7 +196,6 @@ def calculate_channel_spatial_enrichment(dist_matrices_dict, marker_thresholds,
                 current_fov_data.groupby(context_col)[cell_label_col].apply(list).to_dict()
 
             for name_i, name_j in context_pairings:
-                print(f'Context pair: {name_i}, {name_j}')
                 # some FoVs may not have cells with a certain context, so they are skipped here
                 try:
                     context_cell_labels = context_nums_per_id[name_i]
@@ -403,6 +402,7 @@ def calculate_cluster_spatial_enrichment(all_data, dist_matrices_dict, included_
                 current_fov_pheno_data.groupby(context_col)[cell_label_col].apply(list).to_dict()
 
             for name_i, name_j in context_pairings:
+                # some FoVs may not have cells with a certain context, so they are skipped here
                 try:
                     context_cell_labels = context_nums_per_id[name_i]
                     context_cell_labels.extend(context_nums_per_id[name_j])