Generate k means clustering count/mean value matrices by cell type and marker #268
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ngreenwald
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ngreenwald
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ngreenwald
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ackagel
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alex-l-kong
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…d marker (#268) * Add function stubs * Add matrix generating process for clustering * Add testing for generate_cluster_labels * ADd testing for generate_cluster_matrix_results * Add exception testing for coverage * Address code review comments * Update docstring * Variable and docstring fixes to make things more clear * Fix docstring for cluster matrix function
y2kbugger
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…d marker (#268) * Add function stubs * Add matrix generating process for clustering * Add testing for generate_cluster_labels * ADd testing for generate_cluster_matrix_results * Add exception testing for coverage * Address code review comments * Update docstring * Variable and docstring fixes to make things more clear * Fix docstring for cluster matrix function
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What is the purpose of this PR?
Addresses and closes #255. Now that we have a method to determine the optimal
kfor k-means clustering of a neighborhood matrix, we add functionality to generate count and mean value matrices by cell type and marker respectively for each cluster. This finishes up point 3 of #139.How did you implement your changes
We add a function to generate the actual k-means clusters and another to generate the corresponding count/mean value matrices.