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Popular repositories

  1. TreeAlgs-Fork TreeAlgs-Fork Public

    Forked from PierreBarrat/TreeAlgs

    TreeAlgs fork for experimenting with ARG simulations

    Julia

  2. augur augur Public

    Forked from nextstrain/augur

    Pipeline components for real-time phylodynamic analysis

    Python

  3. nextclade nextclade Public

    Forked from nextstrain/nextclade

    Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement

    TypeScript

  4. ML_TreeBuilder_Review ML_TreeBuilder_Review Public

    Repository where I evaluate the performance of the ML Tree Builder PhyloFormer on simulated Influenza Data

    Jupyter Notebook

  5. MTKTools MTKTools Public

    This package contains methods for testing the accuracy of the MultiTreeKnit module of TreeKnit.jl

    Jupyter Notebook 1

  6. MTKSimulations MTKSimulations Public

    Repo for assessing the performance and accuracy of MultiTreeKnit

    Julia