Hotfix#1 for 2024 summer release

Fixing some typos, adding some papers

Summertime-summertime 2024 release

Content updates accumulated from the last release, many new neoantigens

Celebrate the summer 2023 release

Content updates accumulated from the last release, various

[CONTENT, INFRASTRUCTURE] New studies & docker

Added records:

• PMID:34811538 - TAAs
• PMID:33945786 - SARS-CoV-2/HCoV-HKU1 cross-reactive
• PMID:34880106 - many HIV sequences
• PMID:34793243 - lots of SARS-CoV-2 epitopes/TCRs, similar to 10X compendium
• Updated PDB list

Infrastructure:

• On the way to Docker for database build/release

[INFRASTRUCTURE] VDJdb 2022 infrastructure update

• Optimize and improve VDJdb building
• Generate fancier comprehensive summary statistics
• Link to updated vdjdb-motifs motif inference scripts
• Cleanup, minor fixes, etc

[CONTENT] 2021-2022 winter dataset pack

More COVID-19 epitopes, HCV-specific TCRs and tumor antigen-reactive TCRs

[CONTENT] September COVID-19 release

A number of datasets from published studies, preprints and private communications with SARS-CoV-2-specific TCRs.

[CONTENT] More TAAs

More studies with tumor-associated antigens + minor fixes/additions to infrastructure

[CONTENT] TAAs

Tumor-associated antigens from multiple studies

[COVID19] First set of SARS-CoV-2 specific TCRs

• SARS-CoV-2 specific TCRs from Shomuradova et al. (Efimov lab)
• Data from Attaf et al. (CMV B44)
• Data from Cook et al. (CMV/gluten)