Upgrade checkerframework to 3.13.0

[kennknowles]

This particular upgrade involves a number of changes to type checking suppression keys, so it is helpful to do it separate from further upgrades I think.

Note that I've included a minor commit in the same PR that should be kept separate as it is just a fix to the gradle scripts.

A step towards:

• Update checkerframework to 3.16+ #21068 (checkerframework 3.16 fix for lambdas)
• [Task]: Upgrade checkerframework to 3.21.1 for better incremental builds #24397 (checkerframework 3.21.1 better incremental builds)
• Java build flakes: "Memory constraints are impeding performance" #20819 (checkerframework 3.26.0 can suppress "memory constraints impeding performance" warning)

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[codecov]

Codecov Report

Merging #24385 (596e19f) into master (a493cc1) will increase coverage by 0.01%.
The diff coverage is n/a.

@@            Coverage Diff             @@
##           master   #24385      +/-   ##
==========================================
+ Coverage   73.34%   73.36%   +0.01%     
==========================================
  Files         718      718              
  Lines       97034    97033       -1     
==========================================
+ Hits        71172    71186      +14     
+ Misses      24531    24516      -15     
  Partials     1331     1331              

Flag	Coverage Δ
python	83.00% <ø> (+0.02%)	⬆️

Flags with carried forward coverage won't be shown. Click here to find out more.

Impacted Files	Coverage Δ
...ks/python/apache_beam/runners/worker/sdk_worker.py	89.24% <0.00%> (+0.16%)	⬆️
sdks/python/apache_beam/transforms/core.py	92.90% <0.00%> (+0.36%)	⬆️
...eam/runners/portability/fn_api_runner/execution.py	93.13% <0.00%> (+0.63%)	⬆️
...che_beam/runners/interactive/interactive_runner.py	91.77% <0.00%> (+1.26%)	⬆️
.../python/apache_beam/transforms/periodicsequence.py	98.50% <0.00%> (+1.49%)	⬆️
.../python/apache_beam/testing/test_stream_service.py	92.85% <0.00%> (+4.76%)	⬆️

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[kennknowles]

Run Java PreCommit

[kennknowles]

Run Java_Kafka_IO_Direct PreCommit

[kennknowles]

https://ci-beam.apache.org/job/beam_PreCommit_Java_Kafka_IO_Direct_Commit/610/ we see actually broken test assertions (obviously cannot be related to this PR).

https://ci-beam.apache.org/job/beam_PreCommit_Java_Commit/25032/ seems to have a gradle cache lock problem.