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[BEAM-79] merge gearpump-runner into master #3611
Commits on Jul 20, 2016
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Commits on Aug 25, 2016
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Commits on Aug 26, 2016
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gearpump: switch to stable version
They have apparently deleted the SNAPSHOT jar and now builds are failing.
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Commits on Aug 27, 2016
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Commits on Sep 13, 2016
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CompressedSource: CompressedReader is never splittable
The only way it's safe to split a compressed file is if the file is not compressed. This can only happen when the source itself is splittable, and that in turn will result in the inner source's reader being returned. A CompressedReader will only be created in the event that the file is NOT splittable. So remove all the logic handling splittable compressed readers, and instead go with the logic when we know/assume the file is compressed. * TextIO: test compression with larger files It is important for correctness that we test with large files because otherwise the compressed file may be larger than the uncompressed file, which could mask bugs * TextIOTest: flesh out more * TextIOTest: add large uncompressed file
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Remove timeout in DirectRunnerTest
If the test hangs due to bugs, the infrastructure should kill it.
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If provided with an Unbounded PCollection, Write will fail due to restriction of calling finalize only once. This error message fails in a deep stack trace based on it not being possible to apply a GroupByKey. Instead, throw immediately on application with a specific error message.
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Remove Streaming Write Overrides in DataflowRunner
These writes should be forbidden based on the boundedness of the input PCollection. As Write explicitly forbids the application of the transform to an Unbounded PCollection, this will be equivalent in most cases; In cases where the input PCollection is Bounded, due to an UnboundedReadFromBoundedSource, the write will function as expected and does not need to be forbidden.
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Remove Counter and associated code
Aggregator is the model level concept. Counter was specific to the Dataflow Runner, and is now not needed as part of Beam.
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Add TransformEvaluatorFactory#cleanup
This cleans up any state stored within the Transform Evaluator Factory.
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Replace CloningThreadLocal with DoFnLifecycleManager
This is a more focused interface that interacts with a DoFn before it is available for use and after it has completed and the reference is lost. It is required to properly support setup and teardown, as the fields in a ThreadLocal cannot all be cleaned up without additional tracking. Part of BEAM-452.
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Methods annotated with these annotations are used to perform expensive setup work and clean up a DoFn after another method throws an exception or the DoFn is discarded.
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Move ParDo Lifecycle tests to their own file
These tests are not yet functional in all runners, and this makes them easier to ignore.
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Exclude ParDoTest from Dataflow @RunnableOnService
Until we implement it for Dataflow runner.
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Exclude guava-testlib from shading relocation
Previously, guava-testlib guava-testlib was being relocated as part of the shading process, but test-scope dependencies aren't bundled in the uber-jar. As a result, the output JAR was unusable without recreating the same shading rules in a consuming project.
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ByteKeyRangeTracker: synchronize toString
It's the only unsynchronized function, and it could potentially produce bad data.
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Rewrites DoFnReflector to go via DoFnSignature
DoFnSignature encapsulates type information about a DoFn, in particular which arguments/features its methods actually use. Before this commit, DoFnReflector would parse/verify/generate code in one go; after this commit, these stages are separated: DoFnSignature encapsulates all information needed to generate the code. Additionally, removes the unnecessary genericity in the implementation of DoFnReflector's code generation for the very different methods processElement and start/finishBundle. The code is simpler if decomposed into utility functions, rather than attempting a uniform representation for different methods.
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Replace ParDo with simpler transforms where possible
There are a number of places in the Java SDK where we use ParDo.of(DoFn) when MapElements or other higher-level composites are applicable and readable. This change alters a number of those.
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Add inEarlyPanesInGlobalWindow as a PAssert Extractor
This is for use in asserting the contents of speculative panes in the global window.
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Add TestStream to the Testing package
This is a source suitable for use with tests that have interesting triggering behavior. It is an Unbounded source that emits elements in bundles, and advances the watermark and processing time appropriately.
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Datastore Sink support for writing Mutations
This generalizes Write to Write and Delete cleanly.
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Mark JAXBContext as Volatile in JAXBCoder
This corrects the double-checked locking and lazy intialization
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Modify example dependencies to only add runners as optional dependenc…
…ies. Also support excluding runners by disabling the include-runners profile. Tested ITs BQ and WordCount pass on Dataflow WordCount passes on Flink and Spark
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Remove extra timer firings in WatermarkManager
These timers should not be fired - the windows should be expired via the GC timer, and any elements should be emitted if neccessary.
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Remove ParDoTest Suppression in Google Cloud Dataflow
This reenables the lifecycle tests now that they are properly supported. Update the container image.
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[BEAM-253] Unify Flink-Streaming Operator Wrappers
This also replaces the custom Flink StateInternals by proper Flink Partitioned StateInternals.
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[BEAM-102] Add Side Inputs in Flink Streaming Runner
This adds a generic SideInputHandler in runners-core that is only used by the Flink runner right now but can be used by other runner implementations.
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Fix combine tests with Accumulation Mode
These tests were not written in such a way as to succeed if the trigger fired multiple times.
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Use AllPanes as the PaneExtractor in IterableAssert
This ensures that tests with triggering in the global window which assert on the entire PCollection (not a singleton iterable) will succeed over the entire PCollection
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BigQueryIO.Write: raise size limit to 11 TiB
BigQuery has changed their total size quota to 12 TiB. https://cloud.google.com/bigquery/quota-policy#import
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Make WriteTest more resilient to Randomness
In the worst case scenario for random key assignment in Write.ApplyShardingKey, the chance of the number of records per output shard was too high. This makes the test significantly less likely to flake.
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checkstyle: prohibit API client repackaged Guava
Apparently the IllegalImport check only blocks packages, so we had to move to Regexp to get individual classes. As a bonus, this enforcement let us remove two bogus dependencies. Smaller JARs for the win!
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Modified BigtableIO to use DoFn setup/tearDown methods instead of sta…
…rtBundle/finishBundle
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travis.yml: disable updating snapshots
Will still update releases with the --update-snapshots version (I know, bad name)
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DataflowRunner: get PBegin from PInput
Fixes an invalid cast that breaks some PCollectionList-related tests.
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This test exercises the PTransforms that make up the LeaderBoard example. This includes speculative and late trigger firings to produce team and individual scores on a global and fixed window basis. Refactor LeaderBoard to expose the team and user score calculations as composite PTransforms to enable this testing.
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Correct some accidental renames
IDE over-eagerly replaced some occurrences of createAggregator with createAggregatorForDoFn. This corrects that.
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Test that multiple instances of TestStream are supported
Add KeyedResourcePool This interface represents some shared pool of values that may be used by at most one caller at a time. Add LockedKeyedResourcePool which has at most one value per key and at most one user per value at a time. Use KeyedResourcePool in TestStream
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Add Latest CombineFn and PTransforms
Add DoFnTester support for specifying input timestamps
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FluentBackoff: a replacement for a variety of custom backoff implemen…
…tations We have 3 different backoff classes, which don't really have that much different functionality. Add a single, flexible backoff implementation that can be used to replace all three classes. Additionally, this new backoff actually supports more functionality than any of the other three did -- you can limit retries, cap the exponential growth of an individual backoff, and cap the cumulative time spent in backoff; prior implementations did not allow all 3. This also makes the parameters self-obvious (Duration, not number-that-is-also-millis) where appropriate. This initial PR should have no functional changes. * Implement FluentBackoff * Replace other custom BackOff implementations with FluentBackoff
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BigQuery: limit max job polling time to 1 minute
Before the backoff would grow unboundedly, so we could in principle wait 1.5x to 2x the actual job time. For long running jobs this is hours. Now, we just back off at most 1 minute between checking the job state. Note there should be no danger of QPS overload here because we should have very few concurrent outstanding jobs
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Be more accepting in UnboundedReadDeduplicatorTest
Don't depend on all the threads failing. Instead, assert that at most one success was encountered, and we saw at most numThreads - 1 failures.
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Remove timeout in JAXBCoderTest
The infrastructure should kill the test if the await does not return.
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Commits on Sep 14, 2016
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Commits on Oct 26, 2016
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Commits on Nov 3, 2016
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Commits on Nov 8, 2016
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Merge branch 'master' into gearpump-runner
# Conflicts: # runners/pom.xml
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Commits on Nov 12, 2016
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Merge branch 'master' of https://github.com/apache/incubator-beam int…
…o gearpump-runner
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Merge branch 'master' of https://github.com/apache/incubator-beam int…
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This closes apache#1623: [BEAM-1086] Upgrade to latest Gearpump snapshot
Fix NoOpAggregatorFactory Remove print to stdout Skip window assignment when windows don't change Add Window.Bound translator Upgrade Gearpump version
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Merge branch 'master' of https://github.com/apache/incubator-beam int…
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This closes apache#1663: Merge master (b3de17b) into gearpump-runner
Adjustments in gearpump-runner: [BEAM-79] Upgrade to beam-0.5.0-incubating-SNAPSHOT [BEAM-79] Update to latest Gearpump API From master: Disable automatic archiving of Maven builds [BEAM-59] initial interfaces and classes of Beam FileSystem. Change counter name in TestDataflowRunner More escaping in Jenkins timestamp spec Add RunnableOnService test for Metrics Fix seed job fetch spec Show timestamps on log lines in Jenkins [BEAM-1165] Fix unexpected file creation when checking dependencies [BEAM-1178] Make naming of logger objects consistent [BEAM-716] Fix javadoc on with* methods [BEAM-959] Improve check preconditions in JmsIO [BEAM-716] Use AutoValue in JmsIO Fix grammar error (repeated for) Empty TestPipeline need not be run [BEAM-85, BEAM-298] Make TestPipeline a JUnit Rule checking proper usage Change counter name in TestDataflowRunner BigQueryIO: fix streaming write, typo in API [BEAM-853] Force streaming execution on batch pipelines for testing. Expose the adapted source. Use empty SideInputReader, fixes NPE in SimpleDoFnRunnerTest Test that SimpleDoFnRunner wraps exceptions in startBundle and finishBundle Add timer support to DoFnRunner(s) Make TimerSpec and StateSpec fields accessible View.asMap: minor javadoc fixes Revert "Move InMemoryTimerInternals to runners-core" Revert "Moves DoFnAdapters to runners-core" Revert "Removes ArgumentProvider.windowingInternals" Revert "Removes code for wrapping DoFn as an OldDoFn" checkstyle: missed newline in DistributionCell Make {Metric,Counter,Distribution}Cell public Add PTransformOverrideFactory to the Core SDK Move ActiveWindowSet and implementations to runners-core Update Dataflow worker to beam-master-20161216 [BEAM-1108] Remove outdated language about experimental autoscaling [BEAM-450] Shade modules to separate paths [BEAM-362] Port runners to runners-core AggregatoryFactory Move InMemoryTimerInternals to runners-core Delete deprecated TimerCallback Remove deprecated methods of InMemoryTimerInternals Don't incorrectly log error in MetricsEnvironment Renames ParDo.getNewFn to getFn Moves DoFnAdapters to runners-core Removes unused code from NoOpOldDoFn Removes ArgumentProvider.windowingInternals Removes code for wrapping DoFn as an OldDoFn Removes OldDoFn from ParDo Pushes uses of OldDoFn deeper inside Flink runner Remove ParDo.of(OldDoFn) from Apex runner Converts all easy OldDoFns to DoFn [BEAM-1022] Add testing coverage for BigQuery streaming writes Fix mvn command args in Apex postcommit Jenkins job [BEAM-932] Enable findbugs validation (and fix existing issues) Fail to split in FileBasedSource if filePattern expands to empty. [BEAM-1154] Get side input from proper window in ReduceFn [BEAM-1153] GcsUtil: use non-batch API for single file size requests. Fix NPE in StatefulParDoEvaluatorFactoryTest mocking [BEAM-1033] Retry Bigquery Verifier when Query Fails Implement GetDefaultOutputCoder in DirectGroupByKey SimpleDoFnRunner observes window if SideInputReader is nonempty Better comments and cleanup Allow empty string value for ValueProvider types. starter: fix typo in pom.xml Revert "Allow stateful DoFn in DataflowRunner" Re-exclude UsesStatefulParDo tests for Dataflow Some minor changes and fixes for sorter module [BEAM-1149] Explode windows when fn uses side inputs Add Jenkins postcommit for RunnableOnService in Apex runner Update version from 0.5.0-SNAPSHOT to 0.5.0-incubating-SNAPSHOT Update Maven Archetype versions after cutting the release branch Move PerKeyCombineFnRunner to runners-core Update Dataflow worker to beam-master-20161212 [maven-release-plugin] prepare for next development iteration [maven-release-plugin] prepare branch release-0.4.0-incubating Fix version of Kryo in examples/java jenkins-precommit profile Revert 91cc606 "This closes apache#1586": Kryo + UBRFBS [BEAM-909] improve starter archetype Fix JDom malformed comment in Apex runner. [BEAM-927] Fix findbugs and re-enable Maven plugin in JmsIO [BEAM-807] Replace OldDoFn with DoFn. [BEAM-757] Use DoFnRunner in the implementation of DoFn via FlatMapFunction. FileBasedSinkTest: fix tests in Windows OS by using IOChannelUtils.resolve(). FileBasedSink: ignore exceptions when removing temp output files for issues in Windows OS. [BEAM-1142] Upgrade maven-invoker to address maven bug ARCHETYPE-488. Add Tests for Kryo Serialization of URFBS Add no-arg constructor for UnboundedReadFromBoundedSource Revise WindowedWordCount for runner and execution mode portability Factor out ShardedFile from FileChecksumMatcher Add IntervalWindow coder to the standard registry Stop expanding PValues in DirectRunner visitors Migrate AppliedPTransform to use AutoValue Enable and fix DirectRunnerTest case missing @test [BEAM-1130] SparkRunner ResumeFromCheckpointStreamingTest Failing. [BEAM-1133] Add maxNumRecords per micro-batch for Spark runner options. BigQueryIO.Write: support runtime schema and table Fix handling of null ValueProviders in DisplayData [BEAM-551] Fix handling of default for VP [BEAM-1120] Move some DataflowRunner configurations from code to properties [BEAM-551] Fix toString for FileBasedSource [BEAM-921] spark-runner: register sources and coders to serialize with java serializer [BEAM-551] Fix handling of TextIO.Sink ...
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This closes apache#1661: Implement GearpumpPipelineResult
note thread is interrupted on InterruptedException Remove cache for Gearpump on travis reduce timeout to wait for result fix ParDo.BoundMulti translation return encoded key for GroupByKey translation support OutputTimeFn update to latest gearpump dsl function interface fix group by window activate ROS on Gearpump by default update ROS configurations [BEAM-1180] Implement GearpumpPipelineResult
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This closes apache#2150: Add SideInput support for GearpumpRunner
enable ParDoTest [BEAM-79] Add SideInput support for GearpumpRunner
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Merge branch 'master' of https://github.com/apache/incubator-beam int…
…o gearpump-runner
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This closes apache#2241: merge master to gearpump-master and fixup
[BEAM-79] Fix gearpump-runner merge conflicts and test failure Revert BigQueryIO bit of 'Make all uses of CountingOutputStream close their resources' [BEAM-1629] Init metrics/aggregators accumulators before traversing pipeline Generate zip distribution for pyhthon Ignore results from the tox clean up phase Add README to python tarball. Remove exception suppression from PAssert.SideInputCheckerDoFn Remove duplicated dependency from Dataflow runner pom.xml Added assertion failure tests for `PAssert#thatSingleton` Added a test of default PAssert failure reason Javadoc changes [BEAM-1551] Allow `PAssert`s to take a message add unicode type to the typeDict attribute in Python SDK Remove Pipeline.getRunner [BEAM-1686] Use random MQTT clientID when not defined to avoid NPE Properly deal with late processing-time timers [BEAM-1661] Shade guava in the JdbcIO [BEAM-797] A PipelineVisitor that creates a Spark-native pipeline. Introduce Flink-specific state GC implementations Move GC timer checking to StatefulDoFnRunner.CleanupTimer Move pipeline context and add more tests. Add license to new files. Runner API translation of triggers and windowing strategies. Runner API encoding of WindowFns. Runner API context helper classes. Auto-generated runner api proto bindings. HadoopInputFormatIO with junits Test runner to stop on EOT watermark, or timeout. [BEAM-1184] Add integration tests to ElasticsearchIO Jdbc k8 script: postgres data store only accessible inside test project Jdbc k8 & data loading: add teardown and update names/docs Bump Dataflow ROS timeout to 120 minutes Fixup typo in WindowingStrategies Update archetypes [BEAM-1649] Fix unresolved references in Python SDK Upgrade Dataflow container version to beam-master-20170307 Explicitly GBK before stateful ParDo in Dataflow batch Add ServicesResourceTransformer to all shading configuration Fix typo in proto: widow -> window. [BEAM-1646] Remove duplicated bigquery dependency Update python SDK version to the next version. Change Json parsing from gson to jackson for ElasticsearchIO [maven-release-plugin] prepare for next development iteration [maven-release-plugin] prepare branch release-0.6.0 [BEAM-1633] Move .tox/ directory under target/ in Python SDK Make all uses of CountingOutputStream close their resources Flink: register known IOChannelFactories [BEAM-1546] Specify exact version for Python in the SDK [BEAM-1635] TypeError in AfterWatermark class's __repr__ method [BEAM-1636] UnboundedDataset action() does not materialize RDD [BEAM-1556] Make PipelineOptions a lazy-singleton and init IOs as part of it. Add tests for serialization of BigQueryIO.TableRowInfoCoder Fix tox warning for non-whitelisted find command Revert "Implement Single-Output ParDo as a composite" [BEAM-1623] Transform Reshuffle directly in Spark runner [BEAM-1626] Remove cache of MapWithStateDStream on read. Revert "DataflowRunner: experimental support for issuing FnAPI based jobs" Java examples: move shade plugin into default lifecycle Java 8 examples: add shade configuration for producing bundled/fat jar Java 8 examples: add SNAPSHOT repository to the pom.xml file Update Guava version from 19.0 to 20.0 in example projects [BEAM-1625] BoundedDataset action() does not materialize RDD Revert "[maven-release-plugin] prepare branch release-0.6.0" Updating Dataflow API client protobufs Implement Single-Output ParDo as a composite Add a Test for windowed CombineGloballyAsSingletonView Remove SingletonCombine Only Override CreatePCollectionView in Streaming [BEAM-1310] Add running integration tests in JdbcIO on Spark and Dataflow runners DataflowRunner: experimental support for issuing FnAPI based jobs Updates Python SDK source API so that sources can report limited parallelism signals. [BEAM-1188] Python Bigquery Verifier For E2E Test Deprecate Pipeline.getOptions BEAM-1567 hashStream should be closed in PackageUtil#createPackageAttributes() [BEAM-1565] Update Spark runner PostCommit Jenkins job. [maven-release-plugin] prepare branch release-0.6.0 Do not Reassign Windows when WindowFn is null Fix DataflowRunner message about uploaded vs cached files Update javadoc ant to include runners/ and exclude modules with a wildcard Adding per-stage matching to metrics filters Upgrade dill to 0.2.6 and pin it Remove PipelineRunner#apply [BEAM-111] Move WritableCoder to hadoop-common [BEAM-1297] Update maven shade plugin, fix typo and remove unneeded version [BEAM-351] Add DisplayData to KafkaIO Inline rather than reference FunctionSpecs. [BEAM-1517] Garbage collect user state in Flink Runner BEAM-1417 Count should comply with PTransform style guide BEAM-1419 Flatten should comply with PTransform style guide BEAM-1416 Write transform should comply with PTransform style guide BEAM-1426 SortValues should comply with PTransform style guide BEAM-1424 ToString should comply with PTransform style guide BEAM-1423 Sample should comply with PTransform style guide BEAM-1421 Latest should comply with PTransform style guide BEAM-1420 GroupByKey should comply with PTransform style guide Use UnsupportedSideInputReader in GroupAlsoByWindowEvaluatorFactory Include cython tests in presubmits for linux platform Update output stream cython declaration Make side inputs a map, rather than embedding the name in the message. Streaming tests, especially the ones using checkpoints, need a time buffer to finish. ...
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Merge branch 'master' of https://github.com/apache/incubator-beam int…
…o gearpump-runner # Conflicts: # .test-infra/jenkins/job_beam_PostCommit_Java_ValidatesRunner_Gearpump.groovy # runners/pom.xml
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This closes apache#2610: Merge master into gearpump-runner branch
Update gearpump-runner against master changes. add temp dataset location for non-query BigQuerySource added module option, use more common zero test, show module name in log Modify types for input PCollections of Flatten transform to that of the output PCollection [BEAM-1871] Remove another depedendency by moving TestCredential [BEAM-2017] Fix NPE in DataflowRunner when there are no metrics [BEAM-2013] Upgrade to Jackson 2.8.8 [BEAM-2014] Upgrade to Google Auth 0.6.1 [BEAM-2015] Remove shared profile in runners/pom.xml and fix Dataflow ValidatesRunner PostCommit Cache result of BigQuerySourceBase.split Ensure all Read outputs are consumed in Dataflow [BEAM-1441] Remove deprecated ChannelFactory [BEAM-1994] Remove Flink examples package Pin default commons-compress version to beam-parent pom [BEAM-1914] XmlIO now complies with PTransform style guide Separate streaming writes into two pluggable components - CreateTables, and StreamingWriteTables. Also address many code review comments. Also merge with master. Fix tests to properly fake out BigQueryService, and add tests for dynamic-table functionality. Refactor batch loads, and add support for windowed writes. Refactor batch load job path, and add support for data-dependent tables. Refactor streaming write branch into separate reusable components. Add PrepareWrite transform. Use tableRefFunction throughout BigQueryIO. Constant table writes use ConstantTableSpecFunction. Explodes windows before GBKIKWI Creates ProcessFnRunner and wires it through ParDoEvaluator Extracts interface from PushbackSideInputDoFnRunner Minor cleanups in ParDoEvaluator ProcessFn remembers more info about its application context Separates side input test and side output test Changed snappy version to 1.1.4-M3 Upgrade worker to not depend on deprecated now deleted code Delete AppEngineEnvironment Delete IntervalBoundedExponentialBackoff Delete AttemptBoundedExponentialBackoff Remove deprecated/unused code from Pipeline Remove deprecated method in IOChannelUtils Delete deprecated AttemptAndTimeBoundedExponentialBackoff [BEAM-1871] Create new GCP core module package and move several GCP related classes from beam-sdks-java-core over. [BEAM-1964] Upgrade Pylint Remove options_id concept from templated runs. Revert "Revert "Throw specialized exception in value providers"" Revert "Revert "Revert "Revert "Add ValueProvider class for FileBasedSource I/O Transforms"""" Removes unused validation parameter Converts TFRecordIO.Write to AutoValue Gets rid of TFRecordIO.Write.Bound Converts TFRecordIO.Read to AutoValue Gets rid of TFRecordIO.Read.Bound runners-core-construction-java fix artifact name Rename SideOutputValue to OutputValue [BEAM-1990] Comment: Don't use Window.Assign [BEAM-1272] Align the naming of "generateInitialSplits" and "splitIntoBundles" to better reflect their intention Revert "Removes final minor usages of OldDoFn outside OldDoFn itself" Fix Hadoop pom.xml Making metrics usage in datastore_wordcount consistent Remove overloading of __call__ in DirectRunner Clean up DirectRunner Clock and TransformResult Translate PTransforms to and from Runner API Protos [BEAM-1993] Remove special unbounded Flink source/sink Remove flink-annotations dependency Fix Javadoc warnings on Flink Runner Enable flink dependency enforcement and make dependencies explicit [BEAM-59] Register standard FileSystems wherever we register IOChannelFactories [BEAM-1991] Sum.SumDoubleFn => Sum.ofDoubles clean up description for sdk_location Set the Project of a Table Reference at Runtime Only compile HIFIO ITs when compiling with java 8. Update assertions of source_test_utils from camelcase to underscore-separated. Add no-else return to pylintrc Remove getSideInputWindow Remove reference to the isStreaming flag Javadoc fixups after style guide changes Update Dataflow Worker Version [BEAM-1922] Close datasource in JdbcIO when possible Fix javadoc warnings Add javadoc to getCheckpointMark in UnboundedSource Removes final minor usages of OldDoFn outside OldDoFn itself [BEAM-1915] Removes use of OldDoFn from Apex Update Signature of PTransformOverrideFactory [BEAM-1964] Fix lint issues and pylint upgrade Rename DoFn.Context#sideOutput to output [BEAM-1964] Fix lint issues for linter upgrade -3 [BEAM-1964] Fix lint issues for linter upgrade -2 Avoi repackaging bigtable classes in dataflow runner. ApexRunner: register standard IOs when deserializing pipeline options Add PCollections Utilities Free PTransform Names if they are being Replaced [BEAM-1347] Update protos related to State API for prototyping purposes. Update java8 examples pom files to include maven-shade-plugin. fix the simplest typo [BEAM-1964] Fix lint issues for linter upgrade Merge PR#2423: Add Kubernetes scripts for clusters for Performance and Integration tests of Cassandra and ES for Hadoop Input Format IO Remove Triggers.java from SDK entirely [BEAM-1708] Improve error message when GCP not installed Improve gcloud logging message [BEAM-1101, BEAM-1068] Remove service account name credential pipeline options Update user_score.py Pin versions in tox script Improve Empty Create Default Coder Error Message Represent a Pipeline via a list of Top-level Transforms Test all Known Coders to ensure they Serialize via URN [BEAM-1950] Add missing 'static' keyword to MicrobatchSource#initReaderCache ...
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Merge remote-tracking branch 'upstream/master' into gearpump-runner
# Conflicts: # .travis.yml
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This closes apache#2888: Merge master into gearpump-runner branch
Update gearpump-runner against master changes Introduces read/writePubsubMessages Removed coder and formatFn from PubsubIO.Write Removed coder and parseFn from PubsubIO.Read Add Additional CloudObjectTranslators Updating Dataflow API protos and client Remove Coder.asCloudObject and related methods Deprecate <pipeline>.options usage Include LICENSE and NOTICE in python dist files Full removal of Aggregators in Java SDK and Runners [BEAM-59] Move GcsFileSystem to gcp-core [BEAM-2139] Disable SplittableDoFn ValidatesRunner tests for Streaming Flink Runner [BEAM-59] Delete old restrictions on output file paths [BEAM-2093] Use the jackson version from the maven property in maven archetypes [BEAM-2135] Fix pointers to sdks/java/io/hadoop-file-system Instantiate runner briefly in Pipeline Skip null options when converting back to argv [BEAM-2135] Fix pointers to GCP-core [BEAM-1316] Remove the usage of mock from ptransform tests [BEAM-539] Fixes several issues of FileSink. [BEAM-2020] Convert all unknown Coders into CustomCoder CloudObjects BigQuery: swap from asSingleton to asIterable for Cleanup [BEAM-2141] Disable JDBC tests [BEAM-2135] Move hdfs to hadoop-file-system Moves TextSource and TextSink to top level Converts TextIO.Write to AutoValue Removes TextIO.Write.Bound Converts TextIO.Read to AutoValue Removes TextIO.Read.Bound Removes leftover no-op withoutValidation methods Make DoFnSignatures robust to StateSpec subclasses Simplify type parameters of StateSpec and related [BEAM-2135] Move gcp-core to google-cloud-platform-core Revert clean else-return lint changes. Add an @internal Annotation Add retry logic for job creation Update github PR template after travis removal. [BEAM-1764] Remove aggregators from Flink Runner Use processing time for synchronized processing time in Flink runner Remove unneeded elements from the POM files Remove accumulators from DoFn tester. Removing Aggregator from core runner code Remove Aggregators from StatefulDoFn runner [BEAM-59] AvroIOTest: use absolute paths for display data [BEAM-59] DataflowRunnerTests: configure FileSystems in test [BEAM-59] TFRecordIOTest: cleanup [BEAM-59] Core tests: stop using gs:// paths Remove aggregators from DoFn contexts and internal SDK usage [BEAM-2005] Fix build break, ignore test due to change in TestPipeline/FileSystems interaction [BEAM-2005, BEAM-2030, BEAM-2031, BEAM-2032, BEAM-2033, BEAM-2070] Base implementation of HadoopFileSystem. maptask_executor_runner_test: build fix Scattered minor improvements per review comments Moves AvroIO.write().withSchema into write() Converts AvroIO.Write to AutoValue; adds writeGenericRecords() Moves AvroIO.Read.withSchema into read() Removes AvroIO.Write.Bound Converts AvroIO.Read to AutoValue Adds AvroIO.readGenericRecords() Removes AvroIO.Read.Bound Moves AvroSink to upper level Fixes javadoc of TextIO to not point to AvroIO [BEAM-1871] Remove deprecated org.apache.beam.sdk.options.GcsOptions after updating Dataflow worker Copy CloudObject to the Dataflow Module Rename OutputValue to TaggedOutput. Fn API support for Python. [BEAM-1441] remove manual join from apiclient Add CloudObjectTranslators for Avro, Serializable [BEAM-59] Switch mimeType from mutable protected field to constructor [BEAM-1908] Allow setting CREATE_NEVER when using a tablespec in BigQueryIO Remove IOChannelUtils from BigQuery TableRowWriter [BEAM-1925] Remove deprecated context param from DoFn [BEAM-1871] Hide CloudResourceManager client in sdks/java/extensions/gcp-core [BEAM-1676] Internalize ClassPath from Guava 21.0 to fix the failures related to having whitespaces in resource names. Add Cloud Object Translators for Coders Re-enable WindowedWordCountIT on Flink runner in precommit Add A CoderTranslator Interface [BEAM-2130] Ensure the options id is never null. Use a new ReflectData for each AvroCoder instance [BEAM-2074,BEAM-2073] Fixed SourceDStream's rate control usage. [BEAM-2072] Fixed MicrobatchSource.reader stops reading after reaching maxNumRecords for the first time. [BEAM-2129] Fix flaky KafkaIOTest#testUnboundedSourceMetrics [BEAM-59] DataflowRunner: Sink is always a FileBasedSink now Do not repeat log messages in DataflowPipelineJob Update Dataflow worker version to beam-master-20170430 Remove KeyedCombineFn [BEAM-59] Minor style cleanups to WriteOneWindowPerFile Do not prune branches in Jenkins Fix hamcrest-core version in parent pom [BEAM-2114] Tests for KafkaIO: use ExpectedException rule [BEAM-2114] Throw instead of warning when KafkaIO cannot infer coder [BEAM-2114] Fixed display data for Kafka read/write with coders Remove useless continue statements Remove redundant private on enum constructors Remove useless return statement Renames {id,timestamp}Label to {id,timestamp}Attribute throughout SDK Adds PubsubIO.writeStrings(), writeProtos(), writeAvros() Adds PubsubIO.readStrings(), readProtos(), readAvros() Renames PubsubIO.Write builder methods to be style guide compliant Converts PubsubIO.Write to AutoValue Remove override of topic by subscription and vice versa ...
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This closes apache#3172: Sync gearpump-runner with master
Update gearpump-runner against master changes Use stable naming strategy for ByteBuddy invokers Translate a Pipeline in SdkComponents [TRIVIAL] runners-core: delete placeholder Fixes an accidentally found bug in SimpleDoFnRunner Removes OldDoFn and its kin from runners-core Bump Dataflow containers to 0512 Improve Pruning performed by the DirectRunnerApiSurfaceTest Adding support for subnetwork in Python Pipelineoptions Use built-in cmp python function in comparing datastore paths ApexRunner SDF support Fix documentation for the shard_template_name [BEAM-2299] Run maven install on Windows machine for build/test coverage on Windows Remove "Dataflow" from apache_beam __init__.py file Moving the data file for trigger tests to testing/data Fix GcsResourceIdTest in postcommits readAvros should't have proto Message upper bound Reduce Log Level of PubsubUnboundedSource [BEAM-2290] Fix issue where timestamps weren't set when using CompressedSource [BEAM-2279] Fix archetype breakages internal comments Fix shading of guava testlib Rename FileSystems.setDefaultConfigInWorkers [BEAM-2277] HadoopFileSystem: normalize implementation Mark FileSystem and related as Experimental [BEAM-2277] Add ResourceIdTester and test existing ResourceId implementations Remove '/' entirely from determining FileSystem scheme [BEAM-2279] Add HDFS support to Spark runner profiles in archetypes and examples [BEAM-2277] Fix URI_SCHEME_PATTERN in FileSystems BigtableIO should use AutoValue for read and write [BEAM-2153] Move connection management in JmsIO.write() to setup/teardown methods Mark More values methods Internal Rename filesink to filebasedsink Enable SerializableCoder to Serialize with Generic Types Remove unused test data Fix due to GBKO name change. Don't deploy jdk1.8-tests module Remove some internal details from the public API. Move assert_that, equal_to, is_empty to apache_beam.testing.util [BEAM-1345] Clearly delineate public api in apache_beam/typehints. [BEAM-1345] Mark apache_beam/internal as internal. [BEAM-1345] Annotate public members of pvalue. Add internal comments to metrics [BEAM-1340] Add __all__ tags to modules in package apache_beam/transforms [BEAM-2256] Add the last previous range filter Use a consistent calculation for GC Time fix lint error in fake_datastore.py Add __all__ tags to modules in package apache_beam/testing [BEAM-1340] Adds __all__ tags to classes in package apache_beam/io. [BEAM-1345] Clearly delineate public api in apache_beam/coders. [BEAM-1345] Clearly delineate public api in runners package. [BEAM-1345] Mark Pipeline as public. [BEAM-1345] Clearly delineate public API in apache_beam/options Mark internal modules in python datastoreio [BEAM-2260] Improve construction-time errors for Text and AvroIO [BEAM-2179] Archetype generate-sources.sh cleanup the existing sources before rsync [BEAM-1345] Mark windowed value as experimental Add internal usage only comments to util/ Remove protobuf and http-client dependency from runners/google-cloud-dataflow minor typo fix in comment Add support for local execution to PubsubIO using the google cloud emulator [BEAM-2150] Relax regex to support wildcard globbing for GCS bump time of precommits [BEAM-2244] Move details of Metrics to Runners Core Correct javadoc for mobile gaming examples Update SDK Coders to return the Empty List from getCoderArguments Skip generating empty jars for parent poms Fix a typo in TestDataflowRunnerTest Re-enable UsesTimersInParDo tests in Dataflow runner TestDataflowRunner: throw AssertionError only when assertion known failed Allow any throwable in PAssert to constitute adequate failure [BEAM-2242] Ensure that jars are shaded correctly by running the jar plugin before the shade plugin [BEAM-2240] Always augment exception with step name. Adds dependency on findbugs to examples/java Splits WriteBundles into windowed/unwindowed versions Simpler code for setting shard numbers on results in FileBasedSink Implement dynamic-sharding for windowed file outputs, and add an integration test. Renames FileBasedSink inner classes [BEAM-2250] remove experimental and internal things from pydoc [BEAM-2249] Correctly handle partial reads in AvroSource Use text output for first two mobile gaming examples Remove verifyDeterministic from StructuredCoder Update Coder Documentation Improve DirectRunner Javadoc [BEAM-2211] Delete deprecated NoopPathValidator Remove Timer.cancel() from user-facing API Remove Readme files. Renames some python classes and functions that were unnecessarily public. Mark PipelineVisitor and AppliedPTransform as internal. Mark PValue and PValueBase Internal [BEAM-2236] Move test utilities out of python core Include 'sun.reflect' in GcpCoreApiSurfaceTest Fix checkstyle error Shade dependencies in sdks/core Remove trailing whitespace Add per-runner profile to Java 8 examples Register TestSparkPipelineOptions only in src/test to avoid hard hamcrest dep Update Apache Beam Python version to 2.1.0.dev Shade JSR305 in the DirectRunner Remove hadoop io readme ...
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This closes apache#3292: Merge master into gearpump-runner
Adjustments to gearpump-runner: Fix side input handling in DoFnFunction Respect WindowFn#getOutputTime in gearpump-runner Activate Gearpump local-validates-runner-tests in precommit Update against master changes Merged from master: [BEAM-972] Add more unit test to Gearpump runner [BEAM-972] Add unit tests to Gearpump runner [BEAM-79] Fix gearpump-runner merge conflicts and test failure enable ParDoTest [BEAM-79] Add SideInput support for GearpumpRunner [BEAM-79] Support merging windows in GearpumpRunner [BEAM-79] Fix PostCommit test confs for Gearpump runner note thread is interrupted on InterruptedException Remove cache for Gearpump on travis reduce timeout to wait for result fix ParDo.BoundMulti translation return encoded key for GroupByKey translation support OutputTimeFn update to latest gearpump dsl function interface fix group by window activate ROS on Gearpump by default update ROS configurations [BEAM-1180] Implement GearpumpPipelineResult [BEAM-79] Upgrade to beam-0.5.0-incubating-SNAPSHOT [BEAM-79] Update to latest Gearpump API Fix NoOpAggregatorFactory Remove print to stdout Skip window assignment when windows don't change Add Window.Bound translator Upgrade Gearpump version [BEAM-79] fix gearpump runner build failure [BEAM-79] update GearpumpPipelineResult [BEAM-79] Port Gearpump runner from OldDoFn to new DoFn upgrade gearpump-runner to 0.4.0-incubating-SNAPSHOT remove "pipeline" in runner name post-merge fix [BEAM-79] fix integration-test failure fix import order !fixup Minor javadoc clean-up Added even more javadoc to TextIO#withHeader and TextIO#withFooter (2). Added even more javadoc to TextIO#withHeader and TextIO#withFooter. Added javadoc to TextIO#withHeader and TextIO#withFooter. Reverted header and footer to be of type String. Revised according to comments following a code review. Add header/footer support to TextIO.Write [BEAM-242] Enable and fix checkstyle in Flink runner examples Remove timeout in JAXBCoderTest Be more accepting in UnboundedReadDeduplicatorTest BigQuery: limit max job polling time to 1 minute [BEAM-242] Enable checkstyle and fix checkstyle errors in Flink runner [BEAM-456] Add MongoDbIO FluentBackoff: a replacement for a variety of custom backoff implementations Remove the DataflowRunner instructions from examples Put classes in runners-core package into runners.core namespace Delegate populateDipslayData to wrapped combineFn's Fixed Combine display data Cloud Datastore naming clean-up DatastoreIO SplitQueryFn integration test Add Latest CombineFn and PTransforms Remove empty unused method in TestStreamEvaluatorFactory Test that multiple instances of TestStream are supported Correct some accidental renames Fix condition in FlinkStreamingPipelineTranslator Address comments of Flink Side-Input PR [BEAM-569] Define maxNumRecords default value to Long.MAX_VALUE in JmsIO Add LeaderBoardTest take advantage of setup/teardown for KafkaWriter Returned KafkaIO getWatermark log line in debug mode [BEAM-572] Remove Spark Reference in WordCount Update Dataflow Container Version [BEAM-313] Provide a context for SparkRunner DataflowRunner: get PBegin from PInput [BEAM-592] Fix SparkRunner Dependency Problem in WordCount Fix javadoc in Kinesis Organize imports in Kinesis kinesis: a connector for Amazon Kinesis [BEAM-589] Fixing IO.Read transformation Query latest timestamp travis.yml: disable updating snapshots Added support for reporting aggregator values to Spark sinks [BEAM-294] Rename dataflow references to beam Modified BigtableIO to use DoFn setup/tearDown methods instead of startBundle/finishBundle checkstyle: prohibit API client repackaged Guava Make WriteTest more resilient to Randomness Update DoFn javadocs to remove references to OldDoFn and Dataflow [BEAM-545] Promote JobName to PipelineOptions Move the samples data to gs://apache-beam-samples/ Cleanup some javadoc that referring Dataflow BigQueryIO.Write: raise size limit to 11 TiB Optimize imports Update checkstyle.xml to put all imports in one group Fix Exception Unwrapping in TestFlinkRunner Make ParDoLifecycleTest Serializable to Fix Test with TupleTag Use AllPanes as the PaneExtractor in IterableAssert Fix combine tests with Accumulation Mode Enable Flink Streaming Runner RunnableOnService tests Fix Flink Runner Pom for Batch RunnableOnService tests Don't Suppress Throwable in PAssert in Streaming Mode ...
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This closes apache#3388: Sync gearpump-runner branch with master
Remove unused codes Fix kryo exception Fix PCollectionView translation upgrade to gearpump 0.8.4-SNAPSHOT Fix side input handling in DoFnFunction Respect WindowFn#getOutputTime in gearpump-runner Activate Gearpump local-validates-runner-tests in precommit Update against master changes Update gearpump-runner against master changes Update gearpump-runner against master changes Update gearpump-runner against master changes. [BEAM-972] Add more unit test to Gearpump runner [BEAM-972] Add unit tests to Gearpump runner [BEAM-79] Fix gearpump-runner merge conflicts and test failure enable ParDoTest [BEAM-79] Add SideInput support for GearpumpRunner [BEAM-79] Support merging windows in GearpumpRunner [BEAM-79] Fix PostCommit test confs for Gearpump runner note thread is interrupted on InterruptedException Remove cache for Gearpump on travis reduce timeout to wait for result fix ParDo.BoundMulti translation return encoded key for GroupByKey translation support OutputTimeFn update to latest gearpump dsl function interface fix group by window activate ROS on Gearpump by default update ROS configurations [BEAM-1180] Implement GearpumpPipelineResult [BEAM-79] Upgrade to beam-0.5.0-incubating-SNAPSHOT [BEAM-79] Update to latest Gearpump API Fix NoOpAggregatorFactory Remove print to stdout Skip window assignment when windows don't change Add Window.Bound translator Upgrade Gearpump version [BEAM-79] fix gearpump runner build failure [BEAM-79] update GearpumpPipelineResult [BEAM-79] Port Gearpump runner from OldDoFn to new DoFn upgrade gearpump-runner to 0.4.0-incubating-SNAPSHOT remove "pipeline" in runner name post-merge fix [BEAM-79] fix integration-test failure fix import order !fixup Minor javadoc clean-up Added even more javadoc to TextIO#withHeader and TextIO#withFooter (2). Added even more javadoc to TextIO#withHeader and TextIO#withFooter. Added javadoc to TextIO#withHeader and TextIO#withFooter. Reverted header and footer to be of type String. Revised according to comments following a code review. Add header/footer support to TextIO.Write [BEAM-242] Enable and fix checkstyle in Flink runner examples Remove timeout in JAXBCoderTest Be more accepting in UnboundedReadDeduplicatorTest BigQuery: limit max job polling time to 1 minute [BEAM-242] Enable checkstyle and fix checkstyle errors in Flink runner [BEAM-456] Add MongoDbIO FluentBackoff: a replacement for a variety of custom backoff implementations Remove the DataflowRunner instructions from examples Put classes in runners-core package into runners.core namespace Delegate populateDipslayData to wrapped combineFn's Fixed Combine display data Cloud Datastore naming clean-up DatastoreIO SplitQueryFn integration test Add Latest CombineFn and PTransforms Remove empty unused method in TestStreamEvaluatorFactory Test that multiple instances of TestStream are supported Correct some accidental renames Fix condition in FlinkStreamingPipelineTranslator Address comments of Flink Side-Input PR [BEAM-569] Define maxNumRecords default value to Long.MAX_VALUE in JmsIO Add LeaderBoardTest take advantage of setup/teardown for KafkaWriter Returned KafkaIO getWatermark log line in debug mode [BEAM-572] Remove Spark Reference in WordCount Update Dataflow Container Version [BEAM-313] Provide a context for SparkRunner DataflowRunner: get PBegin from PInput [BEAM-592] Fix SparkRunner Dependency Problem in WordCount Fix javadoc in Kinesis Organize imports in Kinesis kinesis: a connector for Amazon Kinesis [BEAM-589] Fixing IO.Read transformation Query latest timestamp travis.yml: disable updating snapshots Added support for reporting aggregator values to Spark sinks [BEAM-294] Rename dataflow references to beam Modified BigtableIO to use DoFn setup/tearDown methods instead of startBundle/finishBundle checkstyle: prohibit API client repackaged Guava Make WriteTest more resilient to Randomness Update DoFn javadocs to remove references to OldDoFn and Dataflow [BEAM-545] Promote JobName to PipelineOptions Move the samples data to gs://apache-beam-samples/ Cleanup some javadoc that referring Dataflow BigQueryIO.Write: raise size limit to 11 TiB Optimize imports Update checkstyle.xml to put all imports in one group Fix Exception Unwrapping in TestFlinkRunner Make ParDoLifecycleTest Serializable to Fix Test with TupleTag Use AllPanes as the PaneExtractor in IterableAssert ...
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This closes apache#3479: [BEAM-79] Merge master into gearpump-runner …
…branch Don't call .testingPipelineOptions() a second time GCP IO ITs now all use --project option Select SDK distribution based on the selected SDK name [BEAM-2373] Upgrade commons-compress dependency version to 1.14 Define the projectId in the SpannerIO Read Test (utest, not itest) Use SDK harness container for FnAPI jobs when worker_harness_container_image is not specified. Add a separate image tag to use with the SDK harness container. Ditch apache commons Add PubSub I/O support to Python DirectRunner Only use ASCII 'a' through 'z' for temporary Spanner tables ReduceFnRunner.onTrigger: add short circuit for empty pane, and move inputWM and pane after the short circuit. WindowingStrategy: add OnTimeBehavior to control whether to emit empty ON_TIME pane. Removed OnceTriggerStateMachine Visit composite nodes when checking for picklability. Upgrade beam bigtable client dependency to 0.9.7.1 Add a Combine Test for Sliding Windows without Context [BEAM-2389] moved GcpCoreApiSurfaceTest to corresponding module, adapted exposed packagees Add Experimental annotation to AMQP and refine Kind for the Experimental IOs [BEAM-2488] Elasticsearch IO should read also in replica shards Use PCollectionViews.toAdditionalInputs in Combine Use PCollectionViews.toAdditionalInputs in ParDo Use PCollectionViews.toAdditionalInputs in ParDoMultiOverrideFactory Fix getAdditionalInputs for SplittableParDo transforms Add utility to expand list of PCollectionViews Read api with naive implementation Pre read api refactoring. Extract `SpannerConfig` and `AbstractSpannerFn` Bump spanner version [BEAM-1187] Improve logging to contain the number of retries done due to IOException and unsuccessful response codes. Add WindowFn#assignsToOneWindow Use installed distribution name for sdk name [BEAM-2522] upgrading jackson to 2.8.9 (mitigating apache#1599) Enable grpc controller in fn_api_runner Removed uses of proto builder clone method [BEAM-2514] Improve error message on missing required value [BEAM-1237] Create AmqpIO Implement streaming GroupByKey in Python DirectRunner Bump Dataflow worker to 0623 Reintroduces DoFn.ProcessContinuation (Dataflow worker compatibility part) Remove old deprecated PubSub code Fix a typo in function args Avoid pickling the entire pipeline per-transform. Fix python fn API data plane remote grpc port access [BEAM-2745] Add Jenkins Suite for Python Performance Test [BEAM-2489] Use dynamic ES port in HIFIOWithElasticTest [BEAM-2497] Fix the reading of concat gzip files Allow output from FinishBundle in DoFnTester DataflowRunner: Reject merging windowing for stateful ParDo
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This closes apache#3515: Sync gearpump-runner with master and upgrade…
… to gearpump 0.8.4 Fix ParDoTest#testPipelineOptionsParameter Upgrade to gearpump 0.8.4 Fix javadoc generation for AmqpIO, CassandraIO and HCatalogIO Simplified ByteBuddyOnTimerInvokerFactory Fix bad merge Made DataflowRunner TransformTranslator public Process timer firings for a window together Ignore processing time timers in expired windows Add timeout to initialization of partition in KafkaIO [BEAM-2534] Handle offset gaps in Kafka messages. Fix PValue input in _PubSubReadEvaluator Update SDK dependencies Disallow Combiner Lifting for multi-window WindowFns [BEAM-2553] Update Maven exec plugin to 1.6.0 to incorporate messaging improvements Website Mergebot Job Update Python SDK version [maven-release-plugin] prepare for next development iteration [maven-release-plugin] prepare branch release-2.1.0 For GCS operations use an http client with a default timeout value. [BEAM-2530] Fix compilation of modules with Java 9 that depend on jdk.tools Make modules that depend on Hadoop and Spark use the same version property Fix DoFn javadoc: StateSpec does not require a key Add support for PipelineOptions parameters Properly convert milliseconds whether there's less than 3/more than 9 digits. TimeUtil did not properly convert (and returned null) when the number of digits for fractions of seconds was less than 3 digits or more than 9 digits. The solution is to pad with zeros when there is less than 3 digits and to truncate when there is more than 3.
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