svn merge -c 1491611 FIXES: MAPREDUCE-5308. Shuffling to memory can g…

…et out-of-sync when fetching multiple compressed map outputs. Contributed by Nathan Roberts

git-svn-id: https://svn.apache.org/repos/asf/hadoop/common/branches/branch-2.1-beta@1491617 13f79535-47bb-0310-9956-ffa450edef68

hadoop-mapreduce-project/CHANGES.txt

@@ -365,6 +365,9 @@ Release 2.1.0-beta - UNRELEASED
     MAPREDUCE-5301. Updated MR code to work with YARN-635 changes of renaming
     YarnRemoteException to YarnException. (Siddharth Seth via vinodkv)
 
+    MAPREDUCE-5308. Shuffling to memory can get out-of-sync when fetching
+    multiple compressed map outputs (Nathan Roberts via jlowe)
+
   BREAKDOWN OF HADOOP-8562 SUBTASKS
 
     MAPREDUCE-4739. Some MapReduce tests fail to find winutils.
@@ -980,6 +983,9 @@ Release 0.23.9 - UNRELEASED
 
   BUG FIXES
 
+    MAPREDUCE-5308. Shuffling to memory can get out-of-sync when fetching
+    multiple compressed map outputs (Nathan Roberts via jlowe)
+
 Release 0.23.8 - 2013-06-05
 
   INCOMPATIBLE CHANGES

hadoop-mapreduce-project/hadoop-mapreduce-client/hadoop-mapreduce-client-core/src/main/java/org/apache/hadoop/mapreduce/task/reduce/InMemoryMapOutput.java

@@ -99,6 +99,19 @@ public void shuffle(MapHost host, InputStream input,
       reporter.progress();
       LOG.info("Read " + memory.length + " bytes from map-output for " +
                 getMapId());
+
+      /**
+       * We've gotten the amount of data we were expecting. Verify the
+       * decompressor has nothing more to offer. This action also forces the
+       * decompressor to read any trailing bytes that weren't critical
+       * for decompression, which is necessary to keep the stream
+       * in sync.
+       */
+      if (input.read() >= 0 ) {
+        throw new IOException("Unexpected extra bytes from input stream for " +
+                               getMapId());
+      }
+
     } catch (IOException ioe) {      
       // Close the streams
       IOUtils.cleanup(LOG, input);

hadoop-mapreduce-project/hadoop-mapreduce-client/hadoop-mapreduce-client-core/src/test/java/org/apache/hadoop/mapreduce/task/reduce/TestFetcher.java

@@ -37,6 +37,7 @@
 import org.apache.commons.logging.LogFactory;
 import org.apache.hadoop.io.Text;
 import org.apache.hadoop.mapred.Counters;
+import org.apache.hadoop.mapred.IFileOutputStream;
 import org.apache.hadoop.mapred.JobConf;
 import org.apache.hadoop.mapred.Reporter;
 import org.apache.hadoop.mapreduce.TaskAttemptID;
@@ -233,6 +234,80 @@ public void testCopyFromHostWait() throws Exception {
     verify(ss).putBackKnownMapOutput(any(MapHost.class), eq(map1ID));
     verify(ss).putBackKnownMapOutput(any(MapHost.class), eq(map2ID));
   }
+  @SuppressWarnings("unchecked")
+  @Test
+  public void testCopyFromHostExtraBytes() throws Exception {
+    LOG.info("testCopyFromHostWaitExtraBytes");
+    JobConf job = new JobConf();
+    TaskAttemptID id = TaskAttemptID.forName("attempt_0_1_r_1_1");
+    ShuffleScheduler<Text, Text> ss = mock(ShuffleScheduler.class);
+    MergeManagerImpl<Text, Text> mm = mock(MergeManagerImpl.class);
+    InMemoryMapOutput<Text, Text> immo = mock(InMemoryMapOutput.class);
+
+    Reporter r = mock(Reporter.class);
+    ShuffleClientMetrics metrics = mock(ShuffleClientMetrics.class);
+    ExceptionReporter except = mock(ExceptionReporter.class);
+    SecretKey key = JobTokenSecretManager.createSecretKey(new byte[]{0,0,0,0});
+    HttpURLConnection connection = mock(HttpURLConnection.class);
+
+    Counters.Counter allErrs = mock(Counters.Counter.class);
+    when(r.getCounter(anyString(), anyString()))
+      .thenReturn(allErrs);
+
+    Fetcher<Text,Text> underTest = new FakeFetcher<Text,Text>(job, id, ss, mm,
+        r, metrics, except, key, connection);
+
+
+    MapHost host = new MapHost("localhost", "http://localhost:8080/");
+
+    ArrayList<TaskAttemptID> maps = new ArrayList<TaskAttemptID>(1);
+    TaskAttemptID map1ID = TaskAttemptID.forName("attempt_0_1_m_1_1");
+    maps.add(map1ID);
+    TaskAttemptID map2ID = TaskAttemptID.forName("attempt_0_1_m_2_1");
+    maps.add(map2ID);
+    when(ss.getMapsForHost(host)).thenReturn(maps);
+
+    String encHash = "vFE234EIFCiBgYs2tCXY/SjT8Kg=";
+    String replyHash = SecureShuffleUtils.generateHash(encHash.getBytes(), key);
+
+    when(connection.getResponseCode()).thenReturn(200);
+    when(connection.getHeaderField(SecureShuffleUtils.HTTP_HEADER_REPLY_URL_HASH))
+      .thenReturn(replyHash);
+    ShuffleHeader header = new ShuffleHeader(map1ID.toString(), 14, 10, 1);
+
+    ByteArrayOutputStream bout = new ByteArrayOutputStream();
+    DataOutputStream dos = new DataOutputStream(bout);
+    IFileOutputStream ios = new IFileOutputStream(dos);
+    header.write(dos);
+    ios.write("MAPDATA123".getBytes());
+    ios.finish();
+
+    ShuffleHeader header2 = new ShuffleHeader(map2ID.toString(), 14, 10, 1);
+    IFileOutputStream ios2 = new IFileOutputStream(dos);
+    header2.write(dos);
+    ios2.write("MAPDATA456".getBytes());
+    ios2.finish();
+
+    ByteArrayInputStream in = new ByteArrayInputStream(bout.toByteArray());
+    when(connection.getInputStream()).thenReturn(in);
+    // 8 < 10 therefore there appear to be extra bytes in the IFileInputStream
+    InMemoryMapOutput<Text, Text> mapOut = new InMemoryMapOutput<Text, Text>(job, map1ID, mm, 8, null, true );
+    InMemoryMapOutput<Text, Text> mapOut2 = new InMemoryMapOutput<Text, Text>(job, map2ID, mm, 10, null, true );
+
+    when(mm.reserve(eq(map1ID), anyLong(), anyInt())).thenReturn(mapOut);
+    when(mm.reserve(eq(map2ID), anyLong(), anyInt())).thenReturn(mapOut2);
+
+
+    underTest.copyFromHost(host);
+
+
+    verify(allErrs).increment(1);
+    verify(ss).copyFailed(map1ID, host, true, false);
+    verify(ss, never()).copyFailed(map2ID, host, true, false);
+
+    verify(ss).putBackKnownMapOutput(any(MapHost.class), eq(map1ID));
+    verify(ss).putBackKnownMapOutput(any(MapHost.class), eq(map2ID));
+  }
 
   @SuppressWarnings("unchecked")
   @Test(timeout=10000) 
@@ -265,7 +340,6 @@ public void testCopyFromHostCompressFailure() throws Exception {
     TaskAttemptID map2ID = TaskAttemptID.forName("attempt_0_1_m_2_1");
     maps.add(map2ID);
     when(ss.getMapsForHost(host)).thenReturn(maps);
-
     String encHash = "vFE234EIFCiBgYs2tCXY/SjT8Kg=";
     String replyHash = SecureShuffleUtils.generateHash(encHash.getBytes(), key);
 
@@ -292,4 +366,4 @@ public void testCopyFromHostCompressFailure() throws Exception {
           encHash);
     verify(ss, times(1)).copyFailed(map1ID, host, true, false);
   }
-}
+}