Multilayer Perceptron regressor and classifier

ANN test

mllib/src/main/scala/org/apache/spark/ml/classification/MultilayerPerceptronClassifier.scala

@@ -0,0 +1,130 @@
+/*
+ * Licensed to the Apache Software Foundation (ASF) under one or more
+ * contributor license agreements.  See the NOTICE file distributed with
+ * this work for additional information regarding copyright ownership.
+ * The ASF licenses this file to You under the Apache License, Version 2.0
+ * (the "License"); you may not use this file except in compliance with
+ * the License.  You may obtain a copy of the License at
+ *
+ *    http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+
+package org.apache.spark.ml.classification
+
+import breeze.linalg.{argmax => Bargmax}
+
+import org.apache.spark.annotation.Experimental
+import org.apache.spark.ml.{PredictionModel, Predictor}
+import org.apache.spark.ml.param.ParamMap
+import org.apache.spark.ml.util.Identifiable
+import org.apache.spark.ml.regression.MultilayerPerceptronParams
+import org.apache.spark.mllib.ann.{FeedForwardTrainer, FeedForwardTopology}
+import org.apache.spark.mllib.linalg.{Vectors, Vector}
+import org.apache.spark.mllib.regression.LabeledPoint
+import org.apache.spark.sql.DataFrame
+
+/**
+ * :: Experimental ::
+ * Label to vector converter.
+ */
+@Experimental
+private object LabelConverter {
+
+  /**
+   * Encodes a label as a vector.
+   * Returns a vector of given length with zeroes at all positions
+   * and value 1.0 at the position that corresponds to the label.
+   *
+   * @param labeledPoint  labeled point
+   * @param labelCount total number of labels
+   * @return  vector encoding of a label
+   */
+  def apply(labeledPoint: LabeledPoint, labelCount: Int): (Vector, Vector) = {
+    val output = Array.fill(labelCount){0.0}
+    output(labeledPoint.label.toInt) = 1.0
+    (labeledPoint.features, Vectors.dense(output))
+  }
+
+  /**
+   * Converts a vector to a label.
+   * Returns the position of the maximal element of a vector.
+   *
+   * @param output  label encoded with a vector
+   * @return  label
+   */
+  def apply(output: Vector): Double = {
+    Bargmax(output.toBreeze.toDenseVector).toDouble
+  }
+}
+
+/**
+ * :: Experimental ::
+ * Classifier trainer based on the Multilayer Perceptron.
+ * Each layer has sigmoid activation function, output layer has softmax.
+ * Number of inputs has to be equal to the size of feature vectors.
+ * Number of outputs has to be equal to the total number of labels.
+ *
+ */
+@Experimental
+class MultilayerPerceptronClassifier (override val uid: String)
+  extends Predictor[Vector, MultilayerPerceptronClassifier, MultilayerPerceptronClassifierModel]
+  with MultilayerPerceptronParams {
+
+  override def copy(extra: ParamMap): MultilayerPerceptronClassifier = defaultCopy(extra)
+
+  def this() = this(Identifiable.randomUID("mlpc"))
+
+  /**
+   * Train a model using the given dataset and parameters.
+   * Developers can implement this instead of [[fit()]] to avoid dealing with schema validation
+   * and copying parameters into the model.
+   *
+   * @param dataset  Training dataset
+   * @return  Fitted model
+   */
+  override protected def train(dataset: DataFrame): MultilayerPerceptronClassifierModel = {
+    val labels = getLayers.last.toInt
+    val lpData = extractLabeledPoints(dataset)
+    val data = lpData.map(lp => LabelConverter(lp, labels))
+    val myLayers = getLayers.map(_.toInt)
+    val topology = FeedForwardTopology.multiLayerPerceptron(myLayers, true)
+    val FeedForwardTrainer = new FeedForwardTrainer(topology, myLayers(0), myLayers.last)
+    FeedForwardTrainer.LBFGSOptimizer.setConvergenceTol(getTol).setNumIterations(getMaxIter)
+    FeedForwardTrainer.setStackSize(getBlockSize)
+    val mlpModel = FeedForwardTrainer.train(data)
+    new MultilayerPerceptronClassifierModel(uid, myLayers, mlpModel.weights())
+  }
+}
+
+/**
+ * :: Experimental ::
+ * Classifier model based on the Multilayer Perceptron.
+ * Each layer has sigmoid activation function, output layer has softmax.
+ */
+@Experimental
+class MultilayerPerceptronClassifierModel private[ml] (override val uid: String,
+                                                      layers: Array[Int],
+                                                      weights: Vector)
+  extends PredictionModel[Vector, MultilayerPerceptronClassifierModel]
+  with Serializable {
+
+  private val mlpModel = FeedForwardTopology.multiLayerPerceptron(layers, true).getInstance(weights)
+
+  /**
+   * Predict label for the given features.
+   * This internal method is used to implement [[transform()]] and output [[predictionCol]].
+   */
+  override protected def predict(features: Vector): Double = {
+    LabelConverter(mlpModel.predict(features))
+  }
+
+  override def copy(extra: ParamMap): MultilayerPerceptronClassifierModel = {
+    copyValues(new MultilayerPerceptronClassifierModel(uid, layers, weights), extra)
+  }
+}

mllib/src/main/scala/org/apache/spark/ml/regression/MultilayerPerceptronRegressor.scala

@@ -0,0 +1,206 @@
+/*
+ * Licensed to the Apache Software Foundation (ASF) under one or more
+ * contributor license agreements.  See the NOTICE file distributed with
+ * this work for additional information regarding copyright ownership.
+ * The ASF licenses this file to You under the Apache License, Version 2.0
+ * (the "License"); you may not use this file except in compliance with
+ * the License.  You may obtain a copy of the License at
+ *
+ *    http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+
+package org.apache.spark.ml.regression
+
+import breeze.linalg.{argmax => Bargmax}
+
+import org.apache.spark.Logging
+import org.apache.spark.annotation.Experimental
+import org.apache.spark.ml.{Model, Transformer, Estimator, PredictorParams}
+import org.apache.spark.ml.param._
+import org.apache.spark.ml.param.shared._
+import org.apache.spark.ml.util.Identifiable
+import org.apache.spark.mllib.ann.{FeedForwardTopology, FeedForwardTrainer}
+import org.apache.spark.mllib.linalg.{VectorUDT, Vector}
+import org.apache.spark.sql.{Row, DataFrame}
+import org.apache.spark.sql.functions._
+import org.apache.spark.sql.types.{StructField, StructType}
+
+/**
+ * Params for Multilayer Perceptron.
+ */
+private[ml] trait MultilayerPerceptronParams extends PredictorParams
+with HasSeed with HasMaxIter with HasTol {
+  /**
+   * Layer sizes including input size and output size.
+   * @group param
+   */
+  final val layers: IntArrayParam =
+    // TODO: we need IntegerArrayParam!
+    new IntArrayParam(this, "layers",
+      "Sizes of layers including input and output from bottom to the top." +
+      " E.g., Array(780, 100, 10) means 780 inputs, " +
+      "hidden layer with 100 neurons and output layer of 10 neurons."
+      // TODO: how to check that array is not empty?
+      )
+
+  /**
+   * Block size for stacking input data in matrices. Speeds up the computations.
+   * Cannot be more than the size of the dataset.
+   * @group expertParam
+   */
+  final val blockSize: IntParam = new IntParam(this, "blockSize",
+    "Block size for stacking input data in matrices.",
+    ParamValidators.gt(0))
+
+  /** @group setParam */
+  def setLayers(value: Array[Int]): this.type = set(layers, value)
+
+  /** @group getParam */
+  final def getLayers: Array[Int] = $(layers)
+
+  /** @group setParam */
+  def setBlockSize(value: Int): this.type = set(blockSize, value)
+
+  /** @group getParam */
+  final def getBlockSize: Int = $(blockSize)
+
+  /**
+   * Set the maximum number of iterations.
+   * Default is 100.
+   * @group setParam
+   */
+  def setMaxIter(value: Int): this.type = set(maxIter, value)
+
+  /**
+   * Set the convergence tolerance of iterations.
+   * Smaller value will lead to higher accuracy with the cost of more iterations.
+   * Default is 1E-4.
+   * @group setParam
+   */
+  def setTol(value: Double): this.type = set(tol, value)
+
+  /**
+   * Set the seed for weights initialization.
+   * Default is 11L.
+   * @group setParam
+   */
+  def setSeed(value: Long): this.type = set(seed, value)
+
+  setDefault(seed -> 11L, maxIter -> 100, tol -> 1e-4, layers -> Array(1, 1), blockSize -> 1)
+}
+
+/**
+ * :: Experimental ::
+ * Multi-layer perceptron regression. Contains sigmoid activation function on all layers.
+ * See https://en.wikipedia.org/wiki/Multilayer_perceptron for details.
+ *
+ */
+@Experimental
+class MultilayerPerceptronRegressor (override val uid: String)
+  extends Estimator[MultilayerPerceptronRegressorModel]
+  with MultilayerPerceptronParams with HasInputCol with HasOutputCol with HasRawPredictionCol
+  with Logging {
+
+  /** @group setParam */
+  def setInputCol(value: String): this.type = set(inputCol, value)
+
+  /** @group setParam */
+  def setOutputCol(value: String): this.type = set(outputCol, value)
+
+  /**
+   * Fits a model to the input and output data.
+   * InputCol has to contain input vectors.
+   * OutputCol has to contain output vectors.
+   */
+  override def fit(dataset: DataFrame): MultilayerPerceptronRegressorModel = {
+      val data = dataset.select($(inputCol), $(outputCol)).map {
+        case Row(x: Vector, y: Vector) => (x, y)
+      }
+      val myLayers = getLayers
+      val topology = FeedForwardTopology.multiLayerPerceptron(myLayers, false)
+      val FeedForwardTrainer = new FeedForwardTrainer(topology, myLayers(0), myLayers.last)
+      FeedForwardTrainer.LBFGSOptimizer.setConvergenceTol(getTol).setNumIterations(getMaxIter)
+      FeedForwardTrainer.setStackSize(getBlockSize)
+      val mlpModel = FeedForwardTrainer.train(data)
+      new MultilayerPerceptronRegressorModel(uid, myLayers, mlpModel.weights())
+  }
+
+  /**
+   * :: DeveloperApi ::
+   *
+   * Derives the output schema from the input schema.
+   */
+  override def transformSchema(schema: StructType): StructType = {
+    val inputType = schema($(inputCol)).dataType
+    require(inputType.isInstanceOf[VectorUDT],
+      s"Input column ${$(inputCol)} must be a vector column")
+    val outputType = schema($(outputCol)).dataType
+    require(outputType.isInstanceOf[VectorUDT],
+      s"Input column ${$(outputCol)} must be a vector column")
+    require(!schema.fieldNames.contains($(rawPredictionCol)),
+      s"Output column ${$(rawPredictionCol)} already exists.")
+    val outputFields = schema.fields :+ StructField($(rawPredictionCol), new VectorUDT, false)
+    StructType(outputFields)
+  }
+
+  def this() = this(Identifiable.randomUID("mlpr"))
+
+  override def copy(extra: ParamMap): MultilayerPerceptronRegressor = defaultCopy(extra)
+}
+
+/**
+ * :: Experimental ::
+ * Multi-layer perceptron regression model.
+ *
+ * @param layers array of layer sizes including input and output
+ * @param weights weights (or parameters) of the model
+ */
+@Experimental
+class MultilayerPerceptronRegressorModel private[ml] (override val uid: String,
+                                                      layers: Array[Int],
+                                                      weights: Vector)
+  extends Model[MultilayerPerceptronRegressorModel]
+  with HasInputCol with HasRawPredictionCol {
+
+  private val mlpModel =
+    FeedForwardTopology.multiLayerPerceptron(layers, false).getInstance(weights)
+
+  /** @group setParam */
+  def setInputCol(value: String): this.type = set(inputCol, value)
+
+  /**
+   * Transforms the input dataset.
+   * InputCol has to contain input vectors.
+   * RawPrediction column will contain predictions (outputs of the regressor).
+   */
+  override def transform(dataset: DataFrame): DataFrame = {
+    transformSchema(dataset.schema, logging = true)
+    val pcaOp = udf { mlpModel.predict _ }
+    dataset.withColumn($(rawPredictionCol), pcaOp(col($(inputCol))))
+  }
+
+  /**
+   * :: DeveloperApi ::
+   *
+   * Derives the output schema from the input schema.
+   */
+  override def transformSchema(schema: StructType): StructType = {
+    val inputType = schema($(inputCol)).dataType
+    require(inputType.isInstanceOf[VectorUDT],
+      s"Input column ${$(inputCol)} must be a vector column")
+    require(!schema.fieldNames.contains($(rawPredictionCol)),
+      s"Output column ${$(rawPredictionCol)} already exists.")
+    val outputFields = schema.fields :+ StructField($(rawPredictionCol), new VectorUDT, false)
+    StructType(outputFields)
+  }
+
+  override def copy(extra: ParamMap): MultilayerPerceptronRegressorModel = {
+    copyValues(new MultilayerPerceptronRegressorModel(uid, layers, weights), extra)
+  }
+}